View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2180_high_17 (Length: 395)
Name: NF2180_high_17
Description: NF2180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2180_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 19 - 380
Target Start/End: Original strand, 8061015 - 8061376
Alignment:
| Q |
19 |
gaatggacatgcatattcacttgtcctttcttaaggccaatgcattcagaatcttagcttcaaattatttggacattgaaggaaatcatcactcactctt |
118 |
Q |
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|||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||| |
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| T |
8061015 |
gaatggacatgcatattcacctgtccttccttaaggccaaagcattcagaatcttagcttcaaattatttggacattgaagaacatcatcagccactctt |
8061114 |
T |
|
| Q |
119 |
tgagcaaattgaagagctattggaaaaagtagatgtcacacctgctgtagtggcagagcagctgttgagaagtgaggatgctgatgttgctctcaaagca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8061115 |
cgagcaaattgaagagctattggaaaaagtagatgtcacccctgcagtagtggcagagcagctgttgagaagtgaggatgctgatgttgctctcaaagca |
8061214 |
T |
|
| Q |
219 |
cttctcaaatttcttcaagaaattgacatttcaggagagaaaaactgactttagaaatgcattatgtcatttgcacttgctactattctatctaatattc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8061215 |
cttctcaaatttcttcaagaaattgacatttcaggagagaaaaactgactttagaaatgcattatgtcatttgcacttgctactattctatctaatattc |
8061314 |
T |
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| Q |
319 |
atgactttcaactatctaaaataatacattggcagaattttgagataccactttgcctttat |
380 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
8061315 |
atgactttcaactatctaaaataatacattggcaggactttgagataccactttgcctttat |
8061376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 308
Target Start/End: Complemental strand, 7931566 - 7931273
Alignment:
| Q |
19 |
gaatggacatgcatattcacttgtcctttcttaaggccaatgcattcagaatcttagcttcaaattatttggacattgaaggaaatcatcactcactctt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||| |
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| T |
7931566 |
gaatggacatgcatattcacttgtcctttcttaaggccaatacattcagaatcttagcttcaaattatttggacattgaagaacatcatcagccactctt |
7931467 |
T |
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| Q |
119 |
tgagcaaattgaagagctattggaaaaagtagatg----tcacacctgctgtagtggcagagcagctgttgagaagtgaggatgctgatgttgctctcaa |
214 |
Q |
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| T |
7931466 |
tgagcaaattgaagagctattggaaaaagtagatgccatgcacacctgctgtagtggcagagcagctgttgagaagtgaggatgctgatgttgctctcaa |
7931367 |
T |
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| Q |
215 |
agcacttctcaaatttcttcaagaaattgacatttcaggagagaaaaactgactttagaaatgcattatgtcatttgcacttgctactattcta |
308 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||| |
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| T |
7931366 |
agcacttctcaaatttcttcaagaaattgatatttcaggagagaaaaactaatactagaaatgcattatgtcatttgcatctgctactattcta |
7931273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 21 - 251
Target Start/End: Complemental strand, 8056062 - 8055832
Alignment:
| Q |
21 |
atggacatgcatattcacttgtcctttcttaaggccaatgcattcagaatcttagcttcaaattatttggacattgaaggaaatcatcactcactctttg |
120 |
Q |
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||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| | ||||||| |||||||||| |
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| T |
8056062 |
atggacatgcatattcatttatcctttcttaaggccaaggcattcagaatcttagcttcaaattatttggagattgaagaacatcatcagtcactctttg |
8055963 |
T |
|
| Q |
121 |
agcaaattgaagagctattggaaaaagtagatgtcacacctgctgtagtggcagagcagctgttgagaagtgaggatgctgatgttgctctcaaagcact |
220 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||| ||||||||| |||| ||| ||| |
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| T |
8055962 |
agcaaattgaagagctattggaaaaagtagatgtcacccctgcagtagtggcagagcatctgttgagaagtgaggatcctgatgttgttctcgaagaact |
8055863 |
T |
|
| Q |
221 |
tctcaaatttcttcaagaaattgacatttca |
251 |
Q |
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| | ||||||||||||||||||||||||||| |
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| T |
8055862 |
tataaaatttcttcaagaaattgacatttca |
8055832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 21 - 238
Target Start/End: Original strand, 8053585 - 8053802
Alignment:
| Q |
21 |
atggacatgcatattcacttgtcctttcttaaggccaatgcattcagaatcttagcttcaaattatttggacattgaaggaaatcatcactcactctttg |
120 |
Q |
| |
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|||||||||||||||||| | ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
8053585 |
atggacatgcatattcacctttcctttcttaaggccaaagcattcagaatcttagctgcaaattatttggacattgaaggaaatcatcactcactctttg |
8053684 |
T |
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| Q |
121 |
agcaaattgaagagctattggaaaaagtagatgtcacacctgctgtagtggcagagcagctgttgagaagtgaggatgctgatgttgctctcaaagcact |
220 |
Q |
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| ||||||||||||||||||||||| || |||||| ||||||| |||||||||||| | || ||||||||||| ||| ||||||||||||| |||||| |
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| T |
8053685 |
aacaaattgaagagctattggaaaaggttgatgtctcacctgcagtagtggcagagtatctattgagaagtgaagatcctgatgttgctcttggagcact |
8053784 |
T |
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| Q |
221 |
tctcaaatttcttcaaga |
238 |
Q |
| |
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| | |||||||||||||| |
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| T |
8053785 |
tgttaaatttcttcaaga |
8053802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 25 - 249
Target Start/End: Original strand, 8058137 - 8058362
Alignment:
| Q |
25 |
acatgcatattcacttgtcctttcttaaggccaatgcattcagaatcttagcttcaaattatttggacattgaaggaaatcatcactcactctttgagca |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| | |||||| |||| ||||| || |
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| T |
8058137 |
acatgcatattcacttgtcctttcttaaggccaaagcattcagaatcttagcatcaaattatttggacattgaagaacatcatcggccactgtttgaaca |
8058236 |
T |
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| Q |
125 |
aattgaagagctattggaaaaagtagatgtcacacctgctgtagtggcagagcagctgttgagaagtgaggatgctgatgttgctctcaaagcacttctc |
224 |
Q |
| |
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||||||| |||||||||||||| |||| ||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||| | |
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| T |
8058237 |
aattgaaaagctattggaaaaaatagaggtcacccctgctgtagtggcagagcatctgttgagaagtgaggatcctgatgttgctcttggagcacttatt |
8058336 |
T |
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| Q |
225 |
aaatttcttc-aagaaattgacattt |
249 |
Q |
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|||||||||| ||||||||||||||| |
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| T |
8058337 |
aaatttcttcaaagaaattgacattt |
8058362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 20 - 308
Target Start/End: Complemental strand, 47546688 - 47546400
Alignment:
| Q |
20 |
aatggacatgcatattcacttgtcctttcttaaggccaatgcattcagaatcttagcttcaaattatttggacattgaaggaaatcatcactcactcttt |
119 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47546688 |
aatggacatgcatattcacttgtcctttcttaaggccaaggcattcagaatcttagcttcaaattatttggacattgaaggaaatcatcactcactcttt |
47546589 |
T |
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| Q |
120 |
gagcaaattgaagagctattggaaaaagtagatgtcacacctgctgtagtggcagagcagctgttgagaagtgaggatgctgatgttgctctcaaagcac |
219 |
Q |
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| T |
47546588 |
gaacaaattgaagagctattggaaaaagtagatgtcacacctgcagtagtggcagagcagctgttgagaagtgaggatgctgatgttgctctcaaagcac |
47546489 |
T |
|
| Q |
220 |
ttctcaaatttcttcaagaaattgacatttcaggagagaaaaactgactttagaaatgcattatgtcatttgcacttgctactattcta |
308 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||| |
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| T |
47546488 |
ttctcaaatttcttcaagaaattgacatttcaggagagaaaaactaatactagaaatgcattatgtcatttgcatctgctactattcta |
47546400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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