View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2180_high_2 (Length: 675)

Name: NF2180_high_2
Description: NF2180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2180_high_2
NF2180_high_2
[»] chr3 (1 HSPs)
chr3 (16-657)||(28821559-28822217)


Alignment Details
Target: chr3 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 16 - 657
Target Start/End: Original strand, 28821559 - 28822217
Alignment:
Q  16 atagagcccaaaacctaatcaattgatatcctcttcatatcttcttttaaatttatttttaaaagctaaaacgactctagtttatggattcaaacttttg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28821559 atagagcccaaaacctaatcaattgatatcctcttcatatcttcttttaaatttatttttaaaagctaaaacgactctagtttatggattcaaacttttg 28821658  T
Q  116 aattcttggaccttttgagttagcagtgcaaaaataataattaggaatttaaaatagtttagagtcggatttcagagattgtctgaaccccgactccgga 215  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| | |||||||||||| ||||||||| ||    
T  28821659 aattcttgaactttttgagttagcagtgcaaaaataataattaggaattcaaaatagttcagagtcggattttaaagattgtctgaaacccgactccaga 28821758  T
Q  216 caaatgttagtatttttctcttgtgtgattcaattcctagtaaattaataacaatatgccggcacacataggctagttcaaagtatttatacagatttga 315  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28821759 caaatgttagtatttttctcttgtgtgattcaattcctagt-aattaataacaatatggcggcacacataggctagttcaaagtatttatacagatttga 28821857  T
Q  316 catgaccatggcacatagagacaaatttaagctttacactcttctaaattggcaactaatatcccggcacgtttgaaagataagactaacaagagt---- 411  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||        
T  28821858 catgaccatggcacatagagacaaatttaagctttatactcttctaaattggcaactaatatcccggcacgtgtgaaagataagactaataagagtatgc 28821957  T
Q  412 --------------attagagtaatggcaacatcataatcatggaccaact--aaaaattaataataattagttatttgatgaattatttgaatgttcac 495  Q
                  |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  28821958 tgatgcacgagagaattagagtaatggcaacatcataatcatggaccaactaaaaaaattaataataattagttatttgatgaattatttgaatgttcac 28822057  T
Q  496 gtatcatactaaattattgattaatatttaatactatgtgattttgaggttttgaaattactctaaagtttatcttatgagtgtcacctgagatagtatt 595  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  28822058 gtatcatactaaattattgattaatatttaataatatgtgattttgaggttttgaaattactctaaagtttatcttatgagtgtcacct--gatagtatt 28822155  T
Q  596 tggctttttgctaacaggcaagtacaaagactccaaagacacattttccatcgaagtaaatt 657  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28822156 tggctttttgctaacaggcaagtacaaagactccaaagacacattttccatcgaagtaaatt 28822217  T

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