View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2180_high_21 (Length: 368)
Name: NF2180_high_21
Description: NF2180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2180_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 11546002 - 11545654
Alignment:
| Q |
1 |
caataaattaacagctttaactgataacaataacatcgccttgataaattcatcattcatagaaaaaagaccaaagtcatgtattattatacgatttaaa |
100 |
Q |
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| T |
11546002 |
caataaattaacagctttaactgataacaataacatagaatagataaattcatcattcatagaaaaaagaccaaagtcatgtattattatacgatttaaa |
11545903 |
T |
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| Q |
101 |
atgtcaagcaaacttaattataacataatacaaagaaaagcgttgatttattttgtttgcttaagcaacaaaatgaacaactac--gtccaaattgttaa |
198 |
Q |
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| T |
11545902 |
atgtcaagcaaactta----taacataatacaaagaaaagcattgatttattttgtttgcttaagcaacaaaatgaacaactacacgtccaaattgttaa |
11545807 |
T |
|
| Q |
199 |
atagagctcataagagcatccttcacatttagaatagtagttgccaaatgtgtgtttatatcagtaatatcttccacattaagcacttggtcaatttcat |
298 |
Q |
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| T |
11545806 |
atagagctcataagagcatccttcacatttagaatagtagttgccaaatgtgtgttgatatcagtaatatcttccacattaagcacttggtcaatttcat |
11545707 |
T |
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| Q |
299 |
gtggactagtgctcagaatttgggctgccaaggttaacaacgagccatcttca |
351 |
Q |
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| T |
11545706 |
gtggactagtgctcagaatttgggctgccaaggttaacaacgagccatcttca |
11545654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 143 - 294
Target Start/End: Complemental strand, 11559292 - 11559141
Alignment:
| Q |
143 |
ttgatttattttgtttgcttaagcaacaaaatgaacaactacgtccaaattgttaaatagagctcataagagcatccttcacatttagaatagtagttgc |
242 |
Q |
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| T |
11559292 |
ttgatttattttgtttgcttaagcaacaaaatgaacaactacgtccaaattgttaaatagaactcataagagcatccttcacatttagaatagtagatgc |
11559193 |
T |
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| Q |
243 |
caaatgtgtgtttatatcagtaatatcttccacattaagcacttggtcaatt |
294 |
Q |
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| T |
11559192 |
caattgactgttgatatcattaagagaatccacattaagcacttggccaatt |
11559141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 11559419 - 11559350
Alignment:
| Q |
47 |
aattcatcattcatagaaaaaagaccaaagtcatgtattattatacgatttaaaatgtcaagcaaactta |
116 |
Q |
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| T |
11559419 |
aattcatcattcatagagaaaagaccaaagtcatgtattattataagatttaaaatgtcaagcaaactta |
11559350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 143 - 348
Target Start/End: Original strand, 20915470 - 20915673
Alignment:
| Q |
143 |
ttgatttattttgtttgcttaagcaacaaaatgaacaactacgtccaaattgttaaatagagctcataagagcatccttcacatttagaatagtagttgc |
242 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| || |||||||| ||| | |||||||||||||| |
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| T |
20915470 |
ttgatttattttgtttgcttaagcaacaaaatgaacaactat-tccaaattgttaaatatagctcaaaaaagcatcct-cacttgcagaatagtagttgc |
20915567 |
T |
|
| Q |
243 |
caaatgtgtgtttatatcagtaatatcttccacattaagcacttggtcaatttcatgtggactagtgctcagaatttgggctgccaaggttaacaacgag |
342 |
Q |
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| T |
20915568 |
caattgggtgttgatatcagtaacataatccaaattaaccacttggtcaattgcatatggattagtactcataatttgggatgccaaagttaacaatgag |
20915667 |
T |
|
| Q |
343 |
ccatct |
348 |
Q |
| |
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|||||| |
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| T |
20915668 |
ccatct |
20915673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 186 - 348
Target Start/End: Complemental strand, 20916589 - 20916427
Alignment:
| Q |
186 |
tccaaattgttaaatagagctcataagagcatccttcacatttagaatagtagttgccaaatgtgtgtttatatcagtaatatcttccacattaagcact |
285 |
Q |
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|||||| ||||||||| ||||||| |||||||||||||| | ||||||||||||||||| || ||||| |||||||||| || || | |||||||||| |
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| T |
20916589 |
tccaaactgttaaatatagctcatgagagcatccttcacttgcagaatagtagttgccaattgggtgttcatatcagtaacataatcaaaattaagcact |
20916490 |
T |
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| Q |
286 |
tggtcaatttcatgtggactagtgctcagaatttgggctgccaaggttaacaacgagccatct |
348 |
Q |
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| T |
20916489 |
tagtcaattgcatatggactagtactcgaaatttgggatgccaaagttaacaatgagccatct |
20916427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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