View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2180_high_23 (Length: 363)
Name: NF2180_high_23
Description: NF2180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2180_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 126 - 240
Target Start/End: Original strand, 30103076 - 30103190
Alignment:
| Q |
126 |
tgggtttgggttgttgcttcccttccagaagaacaactcctccaccatcgttttccctctcaaattcacctaatggtatatgccaagaaaaaaggtacta |
225 |
Q |
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| T |
30103076 |
tgggtttgggttgttgcttcccttccagaagaacaactcctccaccatcgttttccctctcaaattcacctaatggtatatgccaagaaaaaaggtacta |
30103175 |
T |
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| Q |
226 |
gtagatgttgccgct |
240 |
Q |
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| T |
30103176 |
gtagatgttgccgct |
30103190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 267 - 341
Target Start/End: Original strand, 30103184 - 30103262
Alignment:
| Q |
267 |
tgccgctcttacttttgccgctaatctttctcttcctatt----aacaaattggaagagatacaagtgtattaatattt |
341 |
Q |
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| T |
30103184 |
tgccgctcttatttttgccgctaatctttctcttcctattaacaaacaaattggaagagatacaagtgtatcaatattt |
30103262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 30102941 - 30102991
Alignment:
| Q |
1 |
ttattcataagattgatttaacaacaaaaattcagacaagtaaaattgtat |
51 |
Q |
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| T |
30102941 |
ttattcataagattgatttaacaacaaaaattcaaacaagtaaaattgtat |
30102991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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