View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2180_high_25 (Length: 345)
Name: NF2180_high_25
Description: NF2180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2180_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 42950261 - 42950433
Alignment:
| Q |
19 |
agaagatgaaggtagt-ggcatgtgaaacataacaccgttatcttcccttttcctagcattcgaacactgttatctttcattttcctagcattcgaaaaa |
117 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42950261 |
agaagatgaaggtataaggcatgtgaaacataacaccgttatcttccattttcctagcattcgaacactgttatctttcattttcctagcattcgaaaaa |
42950360 |
T |
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| Q |
118 |
cttccagcagtccagcaccttcaaggaactttttgtttccatgatcatactcctctgtaaccataggatattt |
190 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42950361 |
cttccagcagtccagcaccttcaaggaactttttgtttccatgatcatactcctctgtaaccataggatattt |
42950433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 220 - 335
Target Start/End: Original strand, 42950432 - 42950547
Alignment:
| Q |
220 |
ttcggttctgcattctgtaccctttgtcccctagtgttttcatcactgctttgatcatccttcatcatgatcataattattacagccagtaatttattca |
319 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42950432 |
ttcggttctacattctgtaccctttgtcccctagtgttttcatcactgctttgattgtccttcatcatgatcataattattacagccagtaatttattca |
42950531 |
T |
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| Q |
320 |
gctaaatatgcctttg |
335 |
Q |
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| T |
42950532 |
gctaaatatgcctttg |
42950547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 285 - 335
Target Start/End: Original strand, 2852094 - 2852144
Alignment:
| Q |
285 |
catgatcataattattacagccagtaatttattcagctaaatatgcctttg |
335 |
Q |
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| T |
2852094 |
catgataataattattacagccagtaatttattcagctaaatatgcctttg |
2852144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 285 - 335
Target Start/End: Original strand, 2904126 - 2904176
Alignment:
| Q |
285 |
catgatcataattattacagccagtaatttattcagctaaatatgcctttg |
335 |
Q |
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| T |
2904126 |
catgataataattattacagccagtaatttattcagctaaatatgcctttg |
2904176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 48
Target Start/End: Original strand, 2852005 - 2852033
Alignment:
| Q |
20 |
gaagatgaaggtagtggcatgtgaaacat |
48 |
Q |
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| T |
2852005 |
gaagatgaaggtagtggcatgtgaaacat |
2852033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 48
Target Start/End: Original strand, 2904037 - 2904065
Alignment:
| Q |
20 |
gaagatgaaggtagtggcatgtgaaacat |
48 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
2904037 |
gaagatgaaggtagtggcatgtgaaacat |
2904065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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