View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2180_high_37 (Length: 280)
Name: NF2180_high_37
Description: NF2180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2180_high_37 |
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| [»] scaffold0018 (2 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 3 - 120
Target Start/End: Complemental strand, 138950 - 138833
Alignment:
| Q |
3 |
caaattttattagcgccgagtcagtgcaagacgcacctaacaactctaagcgacagaaaaacatacacacccaatagatatggaccaaaccgcacataca |
102 |
Q |
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| T |
138950 |
caaattttattagcgccaagccggtgcaagacgcacctaacaactctaagcgacagaaaaacataaacacccaataggtatggaccaaaccgcacataca |
138851 |
T |
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| Q |
103 |
aatgaaagcagccgcaga |
120 |
Q |
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| T |
138850 |
aatgaaagcagctgcaga |
138833 |
T |
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Target: scaffold0018; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 200 - 268
Target Start/End: Complemental strand, 138795 - 138727
Alignment:
| Q |
200 |
aaagagccctccaacccgcagctagccaccacccgcaactctaaaagtcatcgcaaccagcactccctt |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
138795 |
aaagagccctccaacccgcagctagccaccacccgcaactctaaaagtcatcacaacaagcactccctt |
138727 |
T |
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