View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2180_high_43 (Length: 252)

Name: NF2180_high_43
Description: NF2180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2180_high_43
NF2180_high_43
[»] chr8 (3 HSPs)
chr8 (1-240)||(44260846-44261085)
chr8 (92-203)||(6312523-6312635)
chr8 (71-131)||(26024755-26024816)
[»] chr5 (2 HSPs)
chr5 (72-240)||(7433880-7434048)
chr5 (147-236)||(10505089-10505178)
[»] chr4 (8 HSPs)
chr4 (71-240)||(34747211-34747380)
chr4 (92-219)||(9127185-9127313)
chr4 (79-130)||(47547613-47547664)
chr4 (79-165)||(25735265-25735351)
chr4 (59-113)||(25735268-25735323)
chr4 (71-138)||(31199060-31199127)
chr4 (120-171)||(31199076-31199127)
chr4 (89-180)||(47547718-47547809)
[»] chr1 (6 HSPs)
chr1 (60-180)||(14587954-14588077)
chr1 (71-165)||(15256796-15256891)
chr1 (190-240)||(15256656-15256706)
chr1 (71-137)||(46572757-46572823)
chr1 (73-129)||(17710548-17710605)
chr1 (79-107)||(15256594-15256622)
[»] chr3 (2 HSPs)
chr3 (141-240)||(43820755-43820852)
chr3 (60-113)||(40542410-40542465)
[»] chr2 (2 HSPs)
chr2 (60-138)||(37202546-37202625)
chr2 (190-240)||(45139503-45139553)


Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 44261085 - 44260846
Alignment:
Q  1 cttgtagataacttctggatattcattttgnnnnnnnnnttctattttatacaatcggaagataactaccga-tgttcatttaaaaaatttcattttcta 99  Q
    ||||||||||||||||||||||||||||||         | | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  44261085 cttgtagataacttctggatattcattttgaaaaaaaattac-attttatacaatcggaagataactaccgaatgttcatttaaaaaatttcattttcta 44260987  T
Q  100 cctctggtagataattgtcggatgttcatttttaaaattcgattttgtacctccgatagataactaacggattattgcccacttagcatattgttttaca 199  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  44260986 cctctggtagataattgtcggatgttcattttaaaaatttgattttgtaccttcgatagataactaacggattattgcccacttagcatattgttttaca 44260887  T
Q  200 taacaaacatacatcatccataatttctctctcatcttctc 240  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  44260886 taacaaacatacatcatccataatttctctctcatcttctc 44260846  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 92 - 203
Target Start/End: Complemental strand, 6312635 - 6312523
Alignment:
Q  92 attttctacctctggtagataattgtcggatgttcatttttaaaatt-cgattttgtacctccgatagataactaacggattattgcccacttagcatat 190  Q
    ||||| ||| || ||||||||| | ||||||||||||||| |||||| ||||||| |||||||| |||||||||| || |||||||| || ||| ||| |    
T  6312635 attttgtacatccggtagataactatcggatgttcattttaaaaatttcgattttctacctccgttagataactaccgaattattgctcatttaacattt 6312536  T
Q  191 tgttttacataac 203  Q
    |||||||||||||    
T  6312535 tgttttacataac 6312523  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 131
Target Start/End: Original strand, 26024755 - 26024816
Alignment:
Q  71 gatgttcattt-aaaaaatttcattttctacctctggtagataattgtcggatgttcatttt 131  Q
    ||||||||||| ||||||||||||||| ||||| | |||||||| | |||||| ||||||||    
T  26024755 gatgttcattttaaaaaatttcattttgtacctttagtagataactatcggatattcatttt 26024816  T

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Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 72 - 240
Target Start/End: Original strand, 7433880 - 7434048
Alignment:
Q  72 atgttcatttaaaaaatttc-attttctacctctggtagataattgtcggatgttcatttttaaaattcgatttt-gtacctccgatagataactaacgg 169  Q
    |||||||||| ||||||||| ||| |||||||| ||||||||| |  |||||||||||||||||||||| ||||| ||||||||||||||||||||   |    
T  7433880 atgttcattttaaaaatttccattatctacctccggtagataactaccggatgttcatttttaaaattccatttttgtacctccgatagataactacaag 7433979  T
Q  170 attattgcccacttagcatattgttttacataacaaacatacatcatccataatttctctctcatcttctc 240  Q
    ||||||||||| ||| | | |||||||||||||||  |  | |||||||| | |||||||||||| |||||    
T  7433980 attattgcccatttaaccttttgttttacataaca--ctgagatcatccaaactttctctctcattttctc 7434048  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 147 - 236
Target Start/End: Original strand, 10505089 - 10505178
Alignment:
Q  147 tacctccgatagataactaacggattattgcccacttagcatattgttttacataacaaacatacatcatccataatttctctctcatct 236  Q
    |||||| |||||||||||| |||||||||||||| ||| | | |||||||||||||||| || |||||||||| | ||| ||||||||||    
T  10505089 tacctcagatagataactaccggattattgcccatttaaccttttgttttacataacaagcaaacatcatccaaactttttctctcatct 10505178  T

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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 71 - 240
Target Start/End: Original strand, 34747211 - 34747380
Alignment:
Q  71 gatgttcatttaaaaaatttc-attttctacctctggtagataattgtcggatgttcatttttaaaattcgattttgtacctccgatagataactaacgg 169  Q
    ||||||||| | ||||||||| |||||||||||| ||||| ||  |  | |||||||||||  ||||||| | |||||||||||| | |||||||| | |    
T  34747211 gatgttcatattaaaaatttccattttctacctccggtagttagctaccagatgttcatttcaaaaattccactttgtacctccggtggataactacccg 34747310  T
Q  170 attattgcccacttagcatattgttttacataacaaacatacatcatccataatttctctctcatcttctc 240  Q
    ||||||||||| ||| | | ||||||||||||||||||| || ||||| | | |||||||| |||||||||    
T  34747311 attattgcccatttaacct-ttgttttacataacaaacagacgtcatcgaaactttctctcccatcttctc 34747380  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 219
Target Start/End: Original strand, 9127185 - 9127313
Alignment:
Q  92 attttctacctctggtagataattgtcggatgttcatttttaaaattcgattttgtacctccgatagataactaacggattattgcccacttagcatatt 191  Q
    |||||||||||| ||||| ||| |  || |||||| |||| ||| ||  || ||||| ||| |||||||||||| |||||||||||||| ||| | | ||    
T  9127185 attttctacctccggtagttaactaccgaatgttccttttaaaagttacatattgtaactcagatagataactatcggattattgcccaattaacctttt 9127284  T
Q  192 gtttt-acataacaaacatacatcatcca 219  Q
     |||| |||||||||||||||||||||||    
T  9127285 tttttgacataacaaacatacatcatcca 9127313  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 130
Target Start/End: Original strand, 47547613 - 47547664
Alignment:
Q  79 tttaaaaaatttcattttctacctctggtagataattgtcggatgttcattt 130  Q
    |||||||||||||||||||||||||  |||||||| | ||||||||||||||    
T  47547613 tttaaaaaatttcattttctacctccagtagataactatcggatgttcattt 47547664  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 165
Target Start/End: Complemental strand, 25735351 - 25735265
Alignment:
Q  79 tttaaaaaatttcattttctacctctggtagataattgtcggatgttcatttttaaaattcgattttgtacctccgatagataacta 165  Q
    |||||||||||||||||||||||||||  |||||| |  || ||||| ||||| ||||||  ||||||||| || | ||||||||||    
T  25735351 tttaaaaaatttcattttctacctctgtaagataactaccgaatgttgattttaaaaatttcattttgtacttctggtagataacta 25735265  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 113
Target Start/End: Complemental strand, 25735323 - 25735268
Alignment:
Q  59 aagataactaccga-tgttcatttaaaaaatttcattttctacctctggtagataa 113  Q
    |||||||||||||| |||| |||| |||||||||||||| ||| ||||||||||||    
T  25735323 aagataactaccgaatgttgattttaaaaatttcattttgtacttctggtagataa 25735268  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 31199127 - 31199060
Alignment:
Q  71 gatgttcatttaaaaaatttcattttctacctctggtagataattgtcggatgttcatttttaaaatt 138  Q
    ||||||||||| ||||||| |||||| ||| || ||||||||| |  |||||||||||||| ||||||    
T  31199127 gatgttcattttaaaaattccattttgtacatccggtagataactaccggatgttcattttaaaaatt 31199060  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 171
Target Start/End: Complemental strand, 31199127 - 31199076
Alignment:
Q  120 gatgttcatttttaaaattcgattttgtacctccgatagataactaacggat 171  Q
    |||||||||||| ||||||| ||||||||| |||| |||||||||| |||||    
T  31199127 gatgttcattttaaaaattccattttgtacatccggtagataactaccggat 31199076  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 180
Target Start/End: Original strand, 47547718 - 47547809
Alignment:
Q  89 ttcattttctacctctggtagataattgtcggatgttcatttttaaaattcgattttgtacctccgatagataactaacggattattgccca 180  Q
    |||||||||||||||  |||||| | | ||||||||||||||| |||| |  ||||||||||||| ||| |||| ||   ||||||||||||    
T  47547718 ttcattttctacctccagtagatgactatcggatgttcattttaaaaaatttattttgtacctcccataaataaatacttgattattgccca 47547809  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 180
Target Start/End: Original strand, 14587954 - 14588077
Alignment:
Q  60 agataactacc-gatgttcattt--aaaaaatttcattttctacctctggtagataattgtcggatgttcatttttaaaattcgattttgtacctccgat 156  Q
    ||||||||||| |||||||||||  ||||||||||||||||||||||| |||||||  |  ||  |||| ||||  ||||||  ||| |||||||||| |    
T  14587954 agataactaccagatgttcattttaaaaaaatttcattttctacctctagtagatagctaccgattgttaatttaaaaaatttcattatgtacctccggt 14588053  T
Q  157 agataactaacggattattgccca 180  Q
    |||| |||| ||||||||||||||    
T  14588054 agatcactaccggattattgccca 14588077  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 165
Target Start/End: Complemental strand, 15256891 - 15256796
Alignment:
Q  71 gatgttcatttaaaaaatttcattttctacctctggtagataattgtcggatgttcatttt-taaaattcgattttgtacctccgatagataacta 165  Q
    ||||||||||| |||| || |||||| |||||| |||||||||    ||||||||||||||  ||||||  ||||| |||||||| ||||||||||    
T  15256891 gatgttcattttaaaatttccattttatacctccggtagataaccaccggatgttcattttaaaaaatttcattttatacctccggtagataacta 15256796  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 15256656 - 15256706
Alignment:
Q  190 ttgttttacataacaaacatacatcatccataatttctctctcatcttctc 240  Q
    ||||||||||||||||||  | |||||||| | ||||||||||||||||||    
T  15256656 ttgttttacataacaaacggatatcatccaaactttctctctcatcttctc 15256706  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 46572823 - 46572757
Alignment:
Q  71 gatgttcatttaaaaaatttcattttctacctctggtagataattgtcggatgttcatttttaaaat 137  Q
    |||||||||||||||||||| || || |||||| ||||| | | | ||||||||||||||| |||||    
T  46572823 gatgttcatttaaaaaatttaatgttttacctccggtagttgactatcggatgttcattttaaaaat 46572757  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 17710605 - 17710548
Alignment:
Q  73 tgttcatttaaaaaatttca-ttttctacctctggtagataattgtcggatgttcatt 129  Q
    ||||||||| |||||||||| ||||||| ||||||   ||||||||||||||||||||    
T  17710605 tgttcattttaaaaatttcaattttctatctctggctaataattgtcggatgttcatt 17710548  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 107
Target Start/End: Original strand, 15256594 - 15256622
Alignment:
Q  79 tttaaaaaatttcattttctacctctggt 107  Q
    |||||||||||||||||||||||||||||    
T  15256594 tttaaaaaatttcattttctacctctggt 15256622  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 141 - 240
Target Start/End: Original strand, 43820755 - 43820852
Alignment:
Q  141 attttgtacctccgatagataactaacggattattgcccacttagcatattgttttacataacaaacatacatcatccataatttctctctcatcttctc 240  Q
    |||||||| ||||||||||||| || || | ||||  ||| ||| ||| ||  |||||||||||||||||||||||||| || |||||||||| ||||||    
T  43820755 attttgtaactccgatagataattaccgaagtattatccatttaacatttt--tttacataacaaacatacatcatccaaaaattctctctcaccttctc 43820852  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 113
Target Start/End: Original strand, 40542410 - 40542465
Alignment:
Q  60 agataactaccg-atgttcatttaaaaaattt-cattttctacctctggtagataa 113  Q
    |||||||||||| ||||||||||  ||||||| |||||||||||||||||||||||    
T  40542410 agataactaccggatgttcatttttaaaattttcattttctacctctggtagataa 40542465  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 138
Target Start/End: Complemental strand, 37202625 - 37202546
Alignment:
Q  60 agataactacc-gatgttcatttaaaaaatttcattttctacctctggtagataattgtcggatgttcatttttaaaatt 138  Q
    ||||||||||| ||||||||||| ||||||| |||||| ||| |  ||||||||| |  |||||||||||||| ||||||    
T  37202625 agataactaccagatgttcattttaaaaattgcattttgtacattcggtagataactagcggatgttcattttcaaaatt 37202546  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 45139553 - 45139503
Alignment:
Q  190 ttgttttacataacaaacatacatcatccataatttctctctcatcttctc 240  Q
    ||||||||| ||||||| | |||||||||| | ||||||||||||||||||    
T  45139553 ttgttttacttaacaaagagacatcatccaaactttctctctcatcttctc 45139503  T

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