View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2180_high_5 (Length: 594)
Name: NF2180_high_5
Description: NF2180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2180_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 191 - 581
Target Start/End: Original strand, 7101740 - 7102127
Alignment:
| Q |
191 |
attacaatatattttttacattctttcgtaatgctcccaaatttcgtgatgtcatgaaaacctctatggatgtagtccaccatctccttcgtaccaaggt |
290 |
Q |
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| T |
7101740 |
attacaatattttttttacattctttcataatgctcccaaatttcgtgatgtcatgaaaagctctatggatttagtccaccatctccttcgtaccaaggt |
7101839 |
T |
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| Q |
291 |
caaaataacagtttgcagccgtaaatcatgaactcaagtaatagcatagttaagactcaaagagtgagccaaagagttttggcaagaagaaaactcgtga |
390 |
Q |
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| T |
7101840 |
caaaataaaagtttgcagctgtaaatcatgaactcaagtaatagcatagttaagactcaaagagtgagccaaagagttttagcaagaagaaaactcgtga |
7101939 |
T |
|
| Q |
391 |
gttcatcttgaatgcccatatccacgtcctctcgcctttgaatatcgatggaaaccccata-ttcaactctctaaacatgaggcttatccatcaaaatca |
489 |
Q |
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| T |
7101940 |
gttcatcttgaatgcccatatccacgtc--ctcgcctttgaatatcgatggaaaccccatatttcaactctctaaacatgaggcttatccatcaaaatca |
7102037 |
T |
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| Q |
490 |
tagtaggtagttatgttttcatgcctaatataaactggttattaacttttgaaaac-nnnnnnnnataaacttttttctacaaacttttgatg |
581 |
Q |
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| T |
7102038 |
tagtaggtagttatgttttcatgcctaatataaactgg---ttaacttttgaaaactttttttttataaacttttttttacaaacttttgatg |
7102127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 7101499 - 7101675
Alignment:
| Q |
18 |
aaagtaaggagtttataactaaatttatagtttatgcttgagcatgatgaatgacatgggagtgtttcttttacggagaataagcttatagcatgtcatt |
117 |
Q |
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| T |
7101499 |
aaagtaaggactttataactaaatttatagtttatgcttgagcatggtgaatgacatgggagtgtttcttttacagagaataagcttatagcatgtcatt |
7101598 |
T |
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| Q |
118 |
agaaattaatgtgtaaataaatggcggaacatcactataagtgtgggagatagttgataatgtgactacccacatta |
194 |
Q |
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| T |
7101599 |
agaaattaaagtgtaaataaatggcggaacatcactataagtgtgggagatagttgataatgcgactatccacatta |
7101675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 349
Target Start/End: Complemental strand, 40435662 - 40435535
Alignment:
| Q |
220 |
aatgctcccaaatttcgtgatgtcatgaaaacctctatggatgtagtccaccatctccttcgtaccaaggtcaaaat-aacagtttgcagccgtaaatca |
318 |
Q |
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| T |
40435662 |
aatgctcctaaatttcacgatgtcattacgacctctatgaaagtagtccaccatct---ttgaatcatgatcaaaattaacattttgcagttgtaaatca |
40435566 |
T |
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| Q |
319 |
tgaactcaagtaatagcatagttaagactca |
349 |
Q |
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| T |
40435565 |
tgaaccaaaataatagcatagttaagactca |
40435535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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