View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2180_high_50 (Length: 236)
Name: NF2180_high_50
Description: NF2180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2180_high_50 |
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Alignment Details
Target: chr4 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 64 - 225
Target Start/End: Original strand, 46669139 - 46669299
Alignment:
| Q |
64 |
ttccaagaactacataactacagtctacaatgactctctcgcannnnnnnnataggtactcacatttttatttctccttgcatgcgttctcatatttttc |
163 |
Q |
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| T |
46669139 |
ttccaagaactacataactacagtctacaatgattctctcgcattttttt-ataggtactcacatttttatttctccttgcatgcgttttcatatttttc |
46669237 |
T |
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| Q |
164 |
tttctttacagtttgtacctacagccaaagaatccacttcactttgtttaagtgttcatctc |
225 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46669238 |
tttctttacagtttatacctacagccaaagaatccacttcactttgtttaagtgttcatctc |
46669299 |
T |
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