View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2180_high_52 (Length: 233)
Name: NF2180_high_52
Description: NF2180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2180_high_52 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 49521194 - 49520967
Alignment:
| Q |
1 |
tatcagaagaagatggcgaaacttggagtgttcagttgtttagatccattgatggtggagctgtttctaacttccctcaagcaccaaatgaagttataga |
100 |
Q |
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| T |
49521194 |
tatcagaagaagatggcgaaacttggagtgttcagttgtttagatccattgatggtggtgctgtttctaacttccctcaagcaccaaatgaagttataga |
49521095 |
T |
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| Q |
101 |
attaggccttgttagcggaaaagacaacatcattgatagaagcattcaagatgcctatataaatgctatacgaagagcaaaaaacttcatctacattgaa |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49521094 |
attaggccttgttagtggaaaagacaacatcattgatagaagcattcaagatgcctatataaatgctatacgaagagcaaaaaacttcatctacattgaa |
49520995 |
T |
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| Q |
201 |
aatcagtatttcctagggagttcctatg |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
49520994 |
aatcagtatttcctagggagttcctatg |
49520967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 228
Target Start/End: Complemental strand, 49510025 - 49509821
Alignment:
| Q |
24 |
tggagtgttcagttgtttagatccattgatggtggagctgtttctaacttccctcaagcaccaaatgaagttatagaattaggccttgttagcggaaaag |
123 |
Q |
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| T |
49510025 |
tggaatgttcagttgtttagatcaatcgatgctggtgctgcttctggcttccctcaagatccaacagaagccgccgaaaaaggtcttgttactggaaaag |
49509926 |
T |
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| Q |
124 |
acaacatcattgatagaagcattcaagatgcctatataaatgctatacgaagagcaaaaaacttcatctacattgaaaatcagtatttcctagggagttc |
223 |
Q |
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| T |
49509925 |
ataacatcattgatagaagcattcaagatgcctacataaacgctattcgacgagctaagaatttcatctacattgaaaatcagtattttctaggtagttc |
49509826 |
T |
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| Q |
224 |
ctatg |
228 |
Q |
| |
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|||| |
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| T |
49509825 |
atatg |
49509821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 126 - 229
Target Start/End: Original strand, 44662644 - 44662747
Alignment:
| Q |
126 |
aacatcattgatagaagcattcaagatgcctatataaatgctatacgaagagcaaaaaacttcatctacattgaaaatcagtatttcctagggagttcct |
225 |
Q |
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||||| || ||||| || ||||||||||| ||||| |||||||| ||| | ||||| || |||||||||||||||||||| |||||||| || |||| || |
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| T |
44662644 |
aacataatagataggagtattcaagatgcttatatcaatgctattcgacgcgcaaagaatttcatctacattgaaaatcaatatttccttggaagttgct |
44662743 |
T |
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| Q |
226 |
atgc |
229 |
Q |
| |
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|||| |
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| T |
44662744 |
atgc |
44662747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 2416399 - 2416326
Alignment:
| Q |
141 |
agcattcaagatgcctatataaatgctatacgaagagcaaaaaacttcatctacattgaaaatcagtatttcct |
214 |
Q |
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|||||||||||||| ||||| |||||||| || | ||||| ||||||||||| |||||||||||||||||||| |
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| T |
2416399 |
agcattcaagatgcttatattaatgctattcggcgtgcaaagaacttcatctatattgaaaatcagtatttcct |
2416326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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