View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2180_high_54 (Length: 228)
Name: NF2180_high_54
Description: NF2180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2180_high_54 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 21 - 218
Target Start/End: Complemental strand, 48713089 - 48712892
Alignment:
| Q |
21 |
cctaaatttcgtaggctaattagtccatgatgagtttacattgacgcaggataacatacaatgtggcatgttcaattaacgcaccacgtcataatttcta |
120 |
Q |
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| T |
48713089 |
cctaaatttcgtaggctaattagtccatgatgagtttacattgacgcaggataacatacaatgcggcatgttcaattaacgcaccacgtcataatttcta |
48712990 |
T |
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| Q |
121 |
acatcaaattttgacggagggaccattttgaattacattttacaatttcatgaatgtatttgtcaattcacaaaaatcaaaaactttcttgacctatg |
218 |
Q |
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| T |
48712989 |
acatcaaattttgacggagggaccattttgaattacattttacaatttcatgaatgtatttgtcaattcacaaaaatcagaaacttttttgacctatg |
48712892 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 197
Target Start/End: Complemental strand, 25893767 - 25893708
Alignment:
| Q |
138 |
agggaccattttgaattacattttacaatttcatgaatgtatttgtcaattcacaaaaat |
197 |
Q |
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| T |
25893767 |
agggactattttgaacaacattttacaatttcatggatgtatttatcaatttgcaaaaat |
25893708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 41725924 - 41725968
Alignment:
| Q |
157 |
attttacaatttcatgaatgtatttgtcaattcacaaaaatcaaa |
201 |
Q |
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| T |
41725924 |
attttacaatttcacaaatatacttgtcaattcacaaaaatcaaa |
41725968 |
T |
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