View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2180_high_56 (Length: 224)
Name: NF2180_high_56
Description: NF2180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2180_high_56 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 4 - 224
Target Start/End: Complemental strand, 1892821 - 1892601
Alignment:
| Q |
4 |
gtgagatggatataggattatgaactgaaactttttagaattatannnnnnnaagctctcatttatgaaatataaatgatgagagaattgaggaagtcaa |
103 |
Q |
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| T |
1892821 |
gtgaaatgaatataggattatgaactgaaactttttagaattaaaattttttaagctctcatttatgaaatataaatgatgagagaattgaggtagtcaa |
1892722 |
T |
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| Q |
104 |
ttttcacattctggcaaatattatgtagcaccgacgtagacacgtgtggttacatttaggttgaaaataaattgaaaatcaaaccatcaaattgaaccaa |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1892721 |
ttttcacattctggcaaatattatgtagcaccgacgtagacacgtgtggttacatttaggttgaaaataaattgaaaaccaaaccatcaaattgaaccaa |
1892622 |
T |
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| Q |
204 |
actgaattgggactgaaagtt |
224 |
Q |
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|||||| || |||||| |||| |
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| T |
1892621 |
actgaactgtgactgacagtt |
1892601 |
T |
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