View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2180_high_59 (Length: 204)
Name: NF2180_high_59
Description: NF2180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2180_high_59 |
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Alignment Details
Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 98 - 188
Target Start/End: Original strand, 52219025 - 52219115
Alignment:
| Q |
98 |
caagctaaccttgcacattggtgcagccaaaatagcaccatcccaatattctggctttttccggtgcaaaagcagagccacagctcctccc |
188 |
Q |
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| T |
52219025 |
caagctaaccttgcacattggtgcagccaaaatagcaccatcccaatattctggctttttccggtgcaaaagcagagccacagctcctccc |
52219115 |
T |
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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 52218934 - 52218983
Alignment:
| Q |
18 |
agtatatgatgtggcaaaatgataaacataattttacatagaataagaac |
67 |
Q |
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| T |
52218934 |
agtatatgatgtggcaaaatgataaacataattttgcatagaataagaac |
52218983 |
T |
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