View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2180_high_6 (Length: 592)

Name: NF2180_high_6
Description: NF2180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2180_high_6
NF2180_high_6
[»] chr3 (4 HSPs)
chr3 (24-298)||(33769268-33769534)
chr3 (209-298)||(33779839-33779926)
chr3 (210-298)||(37830950-37831045)
chr3 (209-297)||(39465438-39465529)
[»] chr7 (3 HSPs)
chr7 (210-297)||(26962829-26962914)
chr7 (210-298)||(30805933-30806027)
chr7 (210-297)||(30807292-30807385)
[»] chr8 (1 HSPs)
chr8 (209-298)||(37695250-37695337)
[»] chr1 (3 HSPs)
chr1 (209-297)||(27682115-27682201)
chr1 (210-297)||(335355-335440)
chr1 (561-592)||(48528806-48528837)
[»] chr4 (3 HSPs)
chr4 (209-298)||(9984188-9984275)
chr4 (374-440)||(56297604-56297670)
chr4 (210-298)||(15605233-15605322)
[»] chr2 (3 HSPs)
chr2 (209-297)||(37605304-37605392)
chr2 (209-250)||(4245405-4245446)
chr2 (210-250)||(27544458-27544498)
[»] chr5 (1 HSPs)
chr5 (209-297)||(26577027-26577121)


Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 24 - 298
Target Start/End: Complemental strand, 33769534 - 33769268
Alignment:
Q  24 taatttagtaataaaataaagtgaaatcacgtagcatttgtagaattgtagaatcaagtacacattcaaatacatcaatatcaattagtgtacattatta 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||| |||||||||||||||||||||||||||||||||    
T  33769534 taatttagtaataaaataaagtgaaatcacgtagcatttgtagaat--------caagtacacattaaaatacatcaatatcaattagtgtacattatta 33769443  T
Q  124 tacatgcaaaaatcattacgatagtatatatcatctcgaaatatgaaaaagctttatctatatagactacgaaagattaacaagcaccgaccttagctca 223  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  33769442 tacatgcaaaaatcattacaatagtatatatcatctcgaaatatgaaaaagctttatgtatatagactacgaaagcttaacaagcaccgaccttagctca 33769343  T
Q  224 gttggtagagcggaggactgtagttggtttaaacagacatccttaggtcactggttcgaatccggtaggtcggaa 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33769342 gttggtagagcggaggactgtagttggtttaaacagacatccttaggtcactggttcgaatccggtaggtcggaa 33769268  T

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Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 209 - 298
Target Start/End: Complemental strand, 33779926 - 33779839
Alignment:
Q  209 accgaccttagctcagttggtagagcggaggactgtagttggtttaaacagacatccttaggtcactggttcgaatccggtaggtcggaa 298  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||  |||| |||||||||||||||||||||||||||||||||||||    
T  33779926 accgaccttagctcagttggtagagcggaggactgtagttgg--tacgcagatatccttaggtcactggttcgaatccggtaggtcggaa 33779839  T

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Target: chr3; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 210 - 298
Target Start/End: Original strand, 37830950 - 37831045
Alignment:
Q  210 ccgaccttagctcagttggtagagcggaggactgtagttggttta-------aacagacatccttaggtcactggttcgaatccggtaggtcggaa 298  Q
    |||||||||||||||||||||||||||||||||||||||||| ||       || || ||||||||||||||||||||||||||||||||||||||    
T  37830950 ccgaccttagctcagttggtagagcggaggactgtagttggtataaaagcctaatagccatccttaggtcactggttcgaatccggtaggtcggaa 37831045  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 209 - 297
Target Start/End: Original strand, 39465438 - 39465529
Alignment:
Q  209 accgaccttagctcagttggtagagcggaggactgtagttggttt---aaacagacatccttaggtcactggttcgaatccggtaggtcgga 297  Q
    ||||||||||||||||||||||||||||||||||||||||||  |   |  | || ||||||||||||||||||||||||||||||||||||    
T  39465438 accgaccttagctcagttggtagagcggaggactgtagttggaataccatgctgaaatccttaggtcactggttcgaatccggtaggtcgga 39465529  T

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Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 210 - 297
Target Start/End: Original strand, 26962829 - 26962914
Alignment:
Q  210 ccgaccttagctcagttggtagagcggaggactgtagttggtttaaacagacatccttaggtcactggttcgaatccggtaggtcgga 297  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  26962829 ccgaccttagctcagttggtagagcggaggactgtagttggtt--aacagacatccttaggtcactggttcgaatccggtaggtcgga 26962914  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 210 - 298
Target Start/End: Original strand, 30805933 - 30806027
Alignment:
Q  210 ccgaccttagctcagttggtagagcggaggactgtagttggt------ttaaacagacatccttaggtcactggttcgaatccggtaggtcggaa 298  Q
    ||||||||||||||||||||||||||||||||||||||||||        ||| || ||||||||||||||||||||||||||||||||||||||    
T  30805933 ccgaccttagctcagttggtagagcggaggactgtagttggtaacatgccaaatagccatccttaggtcactggttcgaatccggtaggtcggaa 30806027  T

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Target: chr7; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 210 - 297
Target Start/End: Original strand, 30807292 - 30807385
Alignment:
Q  210 ccgaccttagctcagttggtagagcggaggactgtagttggt------ttaaacagacatccttaggtcactggttcgaatccggtaggtcgga 297  Q
    ||||||||||||||||||||||||||||||||||||||||||        ||| || |||||||||||||||||||||||||||||||||||||    
T  30807292 ccgaccttagctcagttggtagagcggaggactgtagttggtaacatgccaaatagccatccttaggtcactggttcgaatccggtaggtcgga 30807385  T

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Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 209 - 298
Target Start/End: Original strand, 37695250 - 37695337
Alignment:
Q  209 accgaccttagctcagttggtagagcggaggactgtagttggtttaaacagacatccttaggtcactggttcgaatccggtaggtcggaa 298  Q
    |||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  37695250 accgaccttagctcagatggtagagcggaggactgtagttggtt--aacagacatccttaggtcactggttcgaatccggtaggtcggaa 37695337  T

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Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 209 - 297
Target Start/End: Complemental strand, 27682201 - 27682115
Alignment:
Q  209 accgaccttagctcagttggtagagcggaggactgtagttggtttaaacagacatccttaggtcactggttcgaatccggtaggtcgga 297  Q
    |||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||    
T  27682201 accgaccttagctcagttggtagagcggaggactgtagttggtc--aacagacatccttaggtcactggttcgaatccggtaggtcgga 27682115  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 210 - 297
Target Start/End: Original strand, 335355 - 335440
Alignment:
Q  210 ccgaccttagctcagttggtagagcggaggactgtagttggtttaaacagacatccttaggtcactggttcgaatccggtaggtcgga 297  Q
    ||||||||||||||||||||||||||||||||||||||||  || |||||||||||||||||||||||||||||| ||||||||||||    
T  335355 ccgaccttagctcagttggtagagcggaggactgtagttg--tttaacagacatccttaggtcactggttcgaattcggtaggtcgga 335440  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 561 - 592
Target Start/End: Original strand, 48528806 - 48528837
Alignment:
Q  561 ttaggtgttgacggttcactattaaatacaat 592  Q
    ||||||||||||||||||||||||||||||||    
T  48528806 ttaggtgttgacggttcactattaaatacaat 48528837  T

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Target: chr4 (Bit Score: 71; Significance: 7e-32; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 209 - 298
Target Start/End: Complemental strand, 9984275 - 9984188
Alignment:
Q  209 accgaccttagctcagttggtagagcggaggactgtagttggtttaaacagacatccttaggtcactggttcgaatccggtaggtcggaa 298  Q
    |||||||||||||||||||||||||||||||||||||||||  || |||||| |||||||||||||||||||||||||||||||||||||    
T  9984275 accgaccttagctcagttggtagagcggaggactgtagttg--ttcaacagatatccttaggtcactggttcgaatccggtaggtcggaa 9984188  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 374 - 440
Target Start/End: Original strand, 56297604 - 56297670
Alignment:
Q  374 ttgctgctattgttgatgattcttctttcttctccatgttatggtgacttgtgatggaacccatatt 440  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  56297604 ttgctgctattgttgatgattcttctttcttctccatgttgtggtgactggtgatggaacccatatt 56297670  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 210 - 298
Target Start/End: Complemental strand, 15605322 - 15605233
Alignment:
Q  210 ccgaccttagctcagttggtagagcggaggactgtagttggtttaa--acagacatccttaggtcactggttcgaatccggtaggtcggaa 298  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||   | |  ||||||||||| ||||||||||||||| |||||||||    
T  15605322 ccgaccttagctcagttggtagagcggaggactgtag-tggttgaacctcgggaatccttaggtcgctggttcgaatccggcaggtcggaa 15605233  T

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Target: chr2 (Bit Score: 61; Significance: 7e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 209 - 297
Target Start/End: Complemental strand, 37605392 - 37605304
Alignment:
Q  209 accgaccttagctcagttggtagagcggaggactgtagttggtttaaacagacatccttaggtcactggttcgaatccggtaggtcgga 297  Q
    ||||||||||||||||||||||||||||||||||||||| |||     |||| ||||||||||||||||||||||||||||||||||||    
T  37605392 accgaccttagctcagttggtagagcggaggactgtagtgggtaacctcagatatccttaggtcactggttcgaatccggtaggtcgga 37605304  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 4245405 - 4245446
Alignment:
Q  209 accgaccttagctcagttggtagagcggaggactgtagttgg 250  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  4245405 accgaccttagctcagttggtagagcggaggactgtagttgg 4245446  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 250
Target Start/End: Complemental strand, 27544498 - 27544458
Alignment:
Q  210 ccgaccttagctcagttggtagagcggaggactgtagttgg 250  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  27544498 ccgaccttagctcagttggtagagtggaggactgtagttgg 27544458  T

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Target: chr5 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 209 - 297
Target Start/End: Complemental strand, 26577121 - 26577027
Alignment:
Q  209 accgaccttagctcagttggtagagcggaggactgtagttggtt--taa----acagacatccttaggtcactggttcgaatccggtaggtcgga 297  Q
    ||||||||||||||||||||||||||||||||||||||| ||||  |||    | ||| ||||||||||||||||||||||||||||||||||||    
T  26577121 accgaccttagctcagttggtagagcggaggactgtagtgggttaataacctgatagatatccttaggtcactggttcgaatccggtaggtcgga 26577027  T

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