View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2180_high_60 (Length: 204)
Name: NF2180_high_60
Description: NF2180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2180_high_60 |
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Alignment Details
Target: chr2 (Bit Score: 114; Significance: 5e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 19215363 - 19215544
Alignment:
| Q |
20 |
agagagaaacaggaacatagaagatgtttgaaggagaaagaaaagagagcaaggcattcaattctagg-----------------agtgagtgtgatcga |
102 |
Q |
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| T |
19215363 |
agagagaaagaggaacatagaagatgtttgaaggagaaagaaaatagagcaaggcattcaattctaggtaaccaaatattgtaggagtgagtgtgatcga |
19215462 |
T |
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| Q |
103 |
aactcagttggtaaatattgaacttgtgaaggtatagaggtactcaaacaaagactatggtgtgaaaagtgtaggaacttct |
184 |
Q |
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| T |
19215463 |
aactcagttggtaaatattgaacttgtgaaggtatagaggtactcaaacaaagactatggcgtgaaaagtgtaggaacttct |
19215544 |
T |
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Target: chr8 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 29821674 - 29821741
Alignment:
| Q |
20 |
agagagaaacaggaacatagaagatgtttgaaggagaaagaaaagagagcaaggcattcaattctagg |
87 |
Q |
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||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29821674 |
agagagaaagagaaacatagaagatgtttgaaggagaaagaaaagagagcaaggcattcaattctagg |
29821741 |
T |
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