View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2180_low_10 (Length: 496)
Name: NF2180_low_10
Description: NF2180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2180_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 457; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 13 - 477
Target Start/End: Original strand, 49584057 - 49584521
Alignment:
| Q |
13 |
caaaggccatagatgttgtttacagaaaccatgatagaatttagtgaaaagttcaggtggaaggaaagttggtacacatttgaaattgtcaagcaagaac |
112 |
Q |
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| T |
49584057 |
caaaggccatagatgttgtttacagaaaccatgatagaatttagtgaaaagttcaggtggaaggaaagttggtacacatttgaaattgtcaagcaagtac |
49584156 |
T |
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| Q |
113 |
tgagcaacatcatcttgctcaattggatcaatttcttctttaagacaaccaatatagattgtttcaacatcatcaccaagaccatctttcagctgtaaaa |
212 |
Q |
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| T |
49584157 |
tgagcaacatcatcttgctcaattggatcaatttcttctttaagacaaccaatatagattgtttcaacatcatcaccaagaccatctttcagctgtaaaa |
49584256 |
T |
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| Q |
213 |
gaagtgaatcctcatcccaagtgaattcccacttaccattctcctctttcctttgtgccttcaatggaagctggttaccaacaatgatcatcctctcttg |
312 |
Q |
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| T |
49584257 |
gaagtgaatcctcatcccaagtgaattcccacttaccattctcctctttcctttgtgccttcaatggaagctggttaccaacaatgatcatcctctcttg |
49584356 |
T |
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| Q |
313 |
agaaatggaggaaggagcatcagaaccaacactgttgttggtttcatcatctaattcagatagcactccagcaacagttgccactctaggaagccttttc |
412 |
Q |
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| T |
49584357 |
agaaatggaggaaggagcatcagaaccaacactgttgttggtttcatcatctaattcagatagcactccagcaacagttgcaactctaggaagccttttc |
49584456 |
T |
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| Q |
413 |
ttttcgcgaccgaaagacggcgagccacatgaagtaagatctaacaagttggaatatgaccttga |
477 |
Q |
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| T |
49584457 |
ttttcgcgaccgaaagacggcgagccacatgaagtaagatctaacaagttggaatatgaccttga |
49584521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 11698339 - 11698415
Alignment:
| Q |
29 |
tgtttacagaaaccatgatagaatttagtgaaaagttcaggtggaaggaaagttggtacacatttgaaattgtcaag |
105 |
Q |
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| T |
11698339 |
tgtttgcaaaaaccatgatagtacttggtaaacatttcaggtggaagaaaagtagggacacatttgaaattctcaag |
11698415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 434 - 477
Target Start/End: Complemental strand, 6935885 - 6935842
Alignment:
| Q |
434 |
gagccacatgaagtaagatctaacaagttggaatatgaccttga |
477 |
Q |
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| T |
6935885 |
gagccacatgaagtaagatctaacaagttagaatatgatcttga |
6935842 |
T |
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