View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2180_low_12 (Length: 456)

Name: NF2180_low_12
Description: NF2180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2180_low_12
NF2180_low_12
[»] chr6 (1 HSPs)
chr6 (2-443)||(17591282-17591720)


Alignment Details
Target: chr6 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 2 - 443
Target Start/End: Complemental strand, 17591720 - 17591282
Alignment:
Q  2 aagtcaaaattagtgaaattataaagcctgcaagagagaaattagtattgatccaaaggcttctctgttagaagctgttaccatttgtttgtagaggaat 101  Q
    ||||||||| |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17591720 aagtcaaaaatagtgaaattataaagcctgcaagagagaaa---gtattgatccaaaggcttctctgttagaagctgttaccatttgtttgtagaggaat 17591624  T
Q  102 ttgagactgcagatcagatgtccgttgagttcatgtctgcgtgttgtaaaggtgttctcatatcccctcgtaataggtgttgcgtgttttgctttcgaca 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17591623 ttgagactgcagatcagatgtccgttgagttcatgtctgcgtgttgtaaaggtgttctcatatcccctcgtaataggtgttgcgtgttttgctttcgaca 17591524  T
Q  202 caacgagaatgttagccatatgttttttctatatgctccttgagtttgaagatttggaaaacggtttgcaatagtctggtgcttctggatgactaggaag 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  17591523 caacgagaatgttagccatatgttttttctatatgctccttgagtttgaagatttggaaaacggtttgcaatagtctggtgcttgtggatgactacgaag 17591424  T
Q  302 tttgacgtggagacgtatcattgcgcgcattaaccttcgtcacgcttgcaactgttttaattctgcattgtccaaattattgcagctaacggataccgcc 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  17591423 tttgacgtggagacgtatcattgcgcgcattaaccttcgtcacgcttgcaactgttttaattctgcatcgtccaaattattgcagctatcggataccgcc 17591324  T
Q  402 ctctggtgatgcctgaagatgttaaaattattctgtttgatg 443  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  17591323 ctctggtgatgcctgaagatgttaaaattattctgtttgatg 17591282  T

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