View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2180_low_14 (Length: 435)
Name: NF2180_low_14
Description: NF2180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2180_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 11 - 417
Target Start/End: Complemental strand, 39586830 - 39586424
Alignment:
| Q |
11 |
cacagataatagtggaagcgttaagcgctcaaaacttgaatcgttttctgctttcctgtggaaaatggttgcatcagccgcttcaaccaatagtgaaaat |
110 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39586830 |
cacaaataatagtggaagcgttaagcgctcaaaacttgaatcgttttctgctttcttgtggaaaatggttgcatcagccgcttcaaccaatagtgaaaat |
39586731 |
T |
|
| Q |
111 |
gttgttgcaaaaatggggattgtggttgacggaagaaagagattaagcaacggtgacaaaaacaaagaagagtttatgagttcgtattttgggaatgtgc |
210 |
Q |
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| T |
39586730 |
gttgttgcaaaaatggggattgtggttgacggaagaaagagattaagcaacggtgacaaaaacaaagaagagtttatgagttcgtattttgggaatgtgc |
39586631 |
T |
|
| Q |
211 |
tttcaactccctatagttgtagattaatagaagaacttgttgaaaagtcgttatgttgggtgacagagcaagttcatgagtttgtggaggttgcggacac |
310 |
Q |
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| T |
39586630 |
tttcaactccctatagttgtagattaatagaagaacttgttgaaaagtcgttatgttgggtgacagagcaagttcatgagtttgtggaggttgcggacac |
39586531 |
T |
|
| Q |
311 |
ggaagaacatttcttgggactaattgattgggtggaagagcatcgaccggttccgggattggcaaggatttattgcggagtaactggtggagcagatgga |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39586530 |
ggaagaacatttcttgggactaattgattgggtggaagagcatcgaccggttccgggattggcaaggatttattgcggagtaactggtggagcagatgga |
39586431 |
T |
|
| Q |
411 |
ccgacat |
417 |
Q |
| |
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||||||| |
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| T |
39586430 |
ccgacat |
39586424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 33 - 385
Target Start/End: Complemental strand, 39553701 - 39553349
Alignment:
| Q |
33 |
aagcgctcaaaacttgaatcgttttctgctttcctgtggaaaatggttgcatcagccgcttcaaccaatagtgaaaatgttgttgcaaaaatggggattg |
132 |
Q |
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|||||||||||||| || || |||||||||||| |||||||||||||||| ||| ||||||| ||||| ||||||| ||||||||||||||||| ||| |
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| T |
39553701 |
aagcgctcaaaactcgagtccttttctgctttcttgtggaaaatggttgccgaagcggcttcaatcaataatgaaaatattgttgcaaaaatggggcttg |
39553602 |
T |
|
| Q |
133 |
tggttgacggaagaaagagattaagcaacggtgacaaaaacaaagaagagtttatgagttcgtattttgggaatgtgctttcaactccctatagttgtag |
232 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||| | ||||||| || |||| |
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| T |
39553601 |
tggttgacggaagaaagaggctaagcaacggtgacaaaaacaaagaagagcttatgaattcatattttgggaatgtgctttcgattccctatggtggtag |
39553502 |
T |
|
| Q |
233 |
attaatagaagaacttgttgaaaagtcgttatgttgggtgacagagcaagttcatgagtttgtggaggttgcggacacggaagaacatttcttgggacta |
332 |
Q |
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|||| |||||| || ||||| || || ||||||||||| | || | ||||||||||||| |||||| || | || || || ||||||||||| ||| |
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| T |
39553501 |
attagcagaagagctggttgataatccgctatgttgggtggctgatcgagttcatgagtttttggaggcagcagtgacagaggagcatttcttgggtcta |
39553402 |
T |
|
| Q |
333 |
attgattgggtggaagagcatcgaccggttccgggattggcaaggatttattg |
385 |
Q |
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| T |
39553401 |
attgattgggtggaagagcatcgaccagttcctggattggctaggatttattg |
39553349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 36 - 385
Target Start/End: Complemental strand, 39543679 - 39543330
Alignment:
| Q |
36 |
cgctcaaaacttgaatcgttttctgctttcctgtggaaaatggttgcatcagccgcttcaaccaatagtgaaaatgttgttgcaaaaatggggattgtgg |
135 |
Q |
| |
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||||||||||| || || |||||||||||| |||||||||||||||| ||| ||||||| ||||| ||||||| ||||||||||||||||| |||||| |
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| T |
39543679 |
cgctcaaaactcgagtccttttctgctttcttgtggaaaatggttgccgaagcggcttcaatcaataatgaaaatattgttgcaaaaatggggcttgtgg |
39543580 |
T |
|
| Q |
136 |
ttgacggaagaaagagattaagcaacggtgacaaaaacaaagaagagtttatgagttcgtattttgggaatgtgctttcaactccctatagttgtagatt |
235 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||| | ||||||| || ||||||| |
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| T |
39543579 |
ttgacggaagaaagaggctaagcaacggtgacaaaaacaaagaagagcttatgaattcatattttgggaatgtgctttcgattccctatggtggtagatt |
39543480 |
T |
|
| Q |
236 |
aatagaagaacttgttgaaaagtcgttatgttgggtgacagagcaagttcatgagtttgtggaggttgcggacacggaagaacatttcttgggactaatt |
335 |
Q |
| |
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| |||||| || ||||| || || ||||||||||| | || | ||||||||||||| |||||| || | || || || ||||||||||| |||||| |
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| T |
39543479 |
agcagaagagctggttgataatccgctatgttgggtggctgatcgagttcatgagtttttggaggcagcagtgacagaggagcatttcttgggtctaatt |
39543380 |
T |
|
| Q |
336 |
gattgggtggaagagcatcgaccggttccgggattggcaaggatttattg |
385 |
Q |
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||||||||||||||||||||||| ||||| |||||||| ||||||||||| |
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| T |
39543379 |
gattgggtggaagagcatcgaccagttcctggattggctaggatttattg |
39543330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 383
Target Start/End: Complemental strand, 17503231 - 17503163
Alignment:
| Q |
315 |
gaacatttcttgggactaattgattgggtggaagagcatcgaccggttccgggattggcaaggatttat |
383 |
Q |
| |
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||||||||| | || || |||||||||||||||| |||||||| ||||| |||||||| | ||||||| |
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| T |
17503231 |
gaacatttcctagggctcattgattgggtggaagcacatcgacctgttcctggattggcgaagatttat |
17503163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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