View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2180_low_15 (Length: 425)

Name: NF2180_low_15
Description: NF2180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2180_low_15
NF2180_low_15
[»] chr1 (12 HSPs)
chr1 (83-356)||(50667467-50667740)
chr1 (281-352)||(50669580-50669651)
chr1 (152-213)||(50667937-50667998)
chr1 (275-352)||(50668295-50668372)
chr1 (180-244)||(50667834-50667898)
chr1 (300-340)||(25885936-25885976)
chr1 (284-351)||(20950950-20951017)
chr1 (305-340)||(25483136-25483171)
chr1 (305-340)||(25603861-25603896)
chr1 (305-340)||(25860864-25860899)
chr1 (297-351)||(20949979-20950033)
chr1 (151-239)||(50668372-50668460)
[»] chr4 (3 HSPs)
chr4 (293-355)||(41075092-41075154)
chr4 (275-345)||(46015607-46015677)
chr4 (294-351)||(46428514-46428570)
[»] chr8 (2 HSPs)
chr8 (298-355)||(5555325-5555382)
chr8 (294-355)||(4525572-4525633)
[»] scaffold0384 (2 HSPs)
scaffold0384 (293-345)||(5039-5091)
scaffold0384 (293-355)||(3958-4024)
[»] scaffold0079 (2 HSPs)
scaffold0079 (293-355)||(6520-6586)
scaffold0079 (293-340)||(7386-7433)
[»] chr7 (1 HSPs)
chr7 (300-335)||(715169-715204)


Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 83 - 356
Target Start/End: Complemental strand, 50667740 - 50667467
Alignment:
Q  83 cagtttaaaggtttttaaaccctaacaagcccagattcacattcacataacatatcattacaccattgagagtaaaacttactttctacttcttcattct 182  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50667740 cagtttaaaggtttttaaaccctaacgagcccagattcacattcacataacatatcattacaccattgagagtaaaacttactttctacttcttcattct 50667641  T
Q  183 tagcaggaaacacattgatcgtcacatgaggctctccatatgtgctctctacgtttttcatcatagcaatttcttttttgttatttgaatggtgctcctt 282  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50667640 tagcagcaaacacattgatcgtcacatgaggctctccatatgtgctctctacgtttttcatcatagcaatttcttttttgttatttgaatggtgctcctt 50667541  T
Q  283 agcaacttcgatttattgttttgatcaaataagaaatcaaagggtgaggatattttaacatggctgaaagttat 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50667540 agcaacttcgatttattgttttgatcaaataagaaatcaaagggtgaggatattttaacatggctgaaagttat 50667467  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 281 - 352
Target Start/End: Complemental strand, 50669651 - 50669580
Alignment:
Q  281 ttagcaacttcgatttattgttttgatcaaataagaaatcaaagggtgaggatattttaacatggctgaaag 352  Q
    |||||||||||  ||||||||||||||||||||||||| ||||||||||| ||| |||||| ||||||||||    
T  50669651 ttagcaacttctgtttattgttttgatcaaataagaaaccaaagggtgagtatactttaacgtggctgaaag 50669580  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 152 - 213
Target Start/End: Complemental strand, 50667998 - 50667937
Alignment:
Q  152 gagtaaaacttactttctacttcttcattcttagcaggaaacacattgatcgtcacatgagg 213  Q
    |||| ||||||||||||||||||||||||||||| |||||| || |||||||| ||||||||    
T  50667998 gagtgaaacttactttctacttcttcattcttagaaggaaatacgttgatcgtaacatgagg 50667937  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 275 - 352
Target Start/End: Complemental strand, 50668372 - 50668295
Alignment:
Q  275 tgctccttagcaacttcgatttattgttttgatcaaataagaaatcaaagggtgaggatattttaacatggctgaaag 352  Q
    |||| |||||||||||   || |||||||||||||||||||||| |||||||||||||| ||| || |||| ||||||    
T  50668372 tgctgcttagcaacttttgttcattgttttgatcaaataagaaaccaaagggtgaggatgtttcaatatggttgaaag 50668295  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 180 - 244
Target Start/End: Complemental strand, 50667898 - 50667834
Alignment:
Q  180 tcttagcaggaaacacattgatcgtcacatgaggctctccatatgtgctctctacgtttttcatc 244  Q
    |||||||| ||||||  ||||||||||||||||||| ||||| ||||| ||||||||| ||||||    
T  50667898 tcttagcaagaaacaagttgatcgtcacatgaggctttccatttgtgcgctctacgttcttcatc 50667834  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 340
Target Start/End: Complemental strand, 25885976 - 25885936
Alignment:
Q  300 gttttgatcaaataagaaatcaaagggtgaggatattttaa 340  Q
    |||| |||||||||||||| |||||||||||||||||||||    
T  25885976 gtttagatcaaataagaaaacaaagggtgaggatattttaa 25885936  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 351
Target Start/End: Complemental strand, 20951017 - 20950950
Alignment:
Q  284 gcaacttcgatttattgttttgatcaaataagaaatcaaagggtgaggatattttaacatggctgaaa 351  Q
    |||||||| ||  ||||||||||||||||||  || |||| |||||||||||||||| |||| |||||    
T  20951017 gcaacttctatccattgttttgatcaaataaacaaccaaaaggtgaggatattttaatatggttgaaa 20950950  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 340
Target Start/End: Original strand, 25483136 - 25483171
Alignment:
Q  305 gatcaaataagaaatcaaagggtgaggatattttaa 340  Q
    |||||||||||||| |||||||||||||||||||||    
T  25483136 gatcaaataagaaaacaaagggtgaggatattttaa 25483171  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 340
Target Start/End: Complemental strand, 25603896 - 25603861
Alignment:
Q  305 gatcaaataagaaatcaaagggtgaggatattttaa 340  Q
    |||||||||||||| |||||||||||||||||||||    
T  25603896 gatcaaataagaaaacaaagggtgaggatattttaa 25603861  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 340
Target Start/End: Complemental strand, 25860899 - 25860864
Alignment:
Q  305 gatcaaataagaaatcaaagggtgaggatattttaa 340  Q
    |||||||||||||| |||||||||||||||||||||    
T  25860899 gatcaaataagaaaacaaagggtgaggatattttaa 25860864  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 351
Target Start/End: Complemental strand, 20950033 - 20949979
Alignment:
Q  297 attgttttgatcaaataagaaatcaaagggtgaggatattttaacatggctgaaa 351  Q
    ||||||||||||||||||  || |||| |||||||||||||||| |||| |||||    
T  20950033 attgttttgatcaaataaacaaccaaaaggtgaggatattttaatatggttgaaa 20949979  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 239
Target Start/End: Complemental strand, 50668460 - 50668372
Alignment:
Q  151 agagtaaaacttactttctacttcttcattcttagcaggaaacacattgatcgtcacatgaggctctccatatgtgctctctacgtttt 239  Q
    ||||||||||||||||||||||||||  |||| ||||  ||||   ||| |||||||| ||| |||||| | | |||||||||| ||||    
T  50668460 agagtaaaacttactttctacttcttgtttctcagcaacaaacggtttggtcgtcacaagagactctccctctatgctctctacttttt 50668372  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 293 - 355
Target Start/End: Complemental strand, 41075154 - 41075092
Alignment:
Q  293 atttattgttttgatcaaataagaaatcaaagggtgaggatattttaacatggctgaaagtta 355  Q
    ||||| |||||||||||||||||||| | || ||||||||||||| || ||||||||||||||    
T  41075154 atttaatgttttgatcaaataagaaacccaaaggtgaggatatttcaatatggctgaaagtta 41075092  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 275 - 345
Target Start/End: Complemental strand, 46015677 - 46015607
Alignment:
Q  275 tgctccttagcaacttcgatttattgttttgatcaaataagaaatcaaagggtgaggatattttaacatgg 345  Q
    ||||||||||||| |||  |||| |||||||||||||||| |||| ||||||||||| |||||||| ||||    
T  46015677 tgctccttagcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaatatgg 46015607  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 351
Target Start/End: Complemental strand, 46428570 - 46428514
Alignment:
Q  294 tttattgttttgatcaaataagaaatcaaagggtgaggatattttaacatggctgaaa 351  Q
    |||| |||||||||||| ||||||||  |||||||||| |||||||| ||||||||||    
T  46428570 tttaatgttttgatcaattaagaaat-gaagggtgaggttattttaatatggctgaaa 46428514  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 298 - 355
Target Start/End: Complemental strand, 5555382 - 5555325
Alignment:
Q  298 ttgttttgatcaaataagaaatcaaagggtgaggatattttaacatggctgaaagtta 355  Q
    ||||||||||||||||||||| |||| ||||||| || ||||| ||||||||||||||    
T  5555382 ttgttttgatcaaataagaaagcaaatggtgaggttactttaatatggctgaaagtta 5555325  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 294 - 355
Target Start/End: Original strand, 4525572 - 4525633
Alignment:
Q  294 tttattgttttgatcaaataagaaatcaaagggtgaggatattttaacatggctgaaagtta 355  Q
    |||| |||||| |||||||||||||| ||||||||||| | |||||| ||||||| ||||||    
T  4525572 tttaatgtttttatcaaataagaaatgaaagggtgaggttgttttaatatggctgcaagtta 4525633  T

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Target: scaffold0384 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 5039 - 5091
Alignment:
Q  293 atttattgttttgatcaaataagaaatcaaagggtgaggatattttaacatgg 345  Q
    |||||||||||||||||||| ||||| | ||||||||||||||||||| ||||    
T  5039 atttattgttttgatcaaatgagaaacctaagggtgaggatattttaatatgg 5091  T

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Target: scaffold0384; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 293 - 355
Target Start/End: Original strand, 3958 - 4024
Alignment:
Q  293 atttattgttttgatcaaataagaaatcaaagggt----gaggatattttaacatggctgaaagtta 355  Q
    |||||||||||||||||||||||||| | ||||||    |||||||||| || ||||||||||||||    
T  3958 atttattgttttgatcaaataagaaacccaagggtgagggaggatatttaaatatggctgaaagtta 4024  T

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Target: scaffold0079 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 293 - 355
Target Start/End: Original strand, 6520 - 6586
Alignment:
Q  293 atttattgttttgatcaaataagaaatcaaagggt----gaggatattttaacatggctgaaagtta 355  Q
    |||||||||||||||||||||||||| | ||||||    |||||||||| || ||||||||||||||    
T  6520 atttattgttttgatcaaataagaaacccaagggtgagggaggatatttaaatatggctgaaagtta 6586  T

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Target: scaffold0079; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 340
Target Start/End: Original strand, 7386 - 7433
Alignment:
Q  293 atttattgttttgatcaaataagaaatcaaagggtgaggatattttaa 340  Q
    |||||||||||||||||||| ||||| | |||||| ||||||||||||    
T  7386 atttattgttttgatcaaatgagaaacctaagggtaaggatattttaa 7433  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 335
Target Start/End: Complemental strand, 715204 - 715169
Alignment:
Q  300 gttttgatcaaataagaaatcaaagggtgaggatat 335  Q
    ||||||||||||||||||| ||||||||||||||||    
T  715204 gttttgatcaaataagaaaacaaagggtgaggatat 715169  T

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