View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2180_low_18 (Length: 405)
Name: NF2180_low_18
Description: NF2180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2180_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 16 - 393
Target Start/End: Original strand, 38920735 - 38921133
Alignment:
| Q |
16 |
atgaacctgcacaaacgcgtttcaattggatctacacaacgttcttcgggccggagataagtggattctcaacaatccatgtnnnnnnntgaggtatgaa |
115 |
Q |
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| T |
38920735 |
atgaacctgcacaaacgcgtttcaattggatctacacgatgttcttcgggccggagataagtggattctcaacaatccatgtaaaaaaatgaggtatgaa |
38920834 |
T |
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| Q |
116 |
taagttat---ttattgttgatttcccaaccataaacatttgtttgctatgcagccatctggatgcttgtttaagtagattatagagatagacagacaat |
212 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38920835 |
taagttattatttattgttgatttcccaaccataaacatttgtttgctatgcagccatctggatgcttgtttaagtagattatagagatagacagacaat |
38920934 |
T |
|
| Q |
213 |
gacattaagctaagctggtggtacccatagaaactaagattttaatgcatgtttcagtatgtaaaaaattgtggatttttaagtgcactattggtaaacc |
312 |
Q |
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| T |
38920935 |
gacattaagctaagctggtggtacccatagaaactaagattttaatgcatgtttcagtatgtaaaaaattgtggatttttaagtgcactattggtaaacc |
38921034 |
T |
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| Q |
313 |
aatattagatatccgtt------------------agtaatgaggctttaatgaacatgtttttatatggaaactccttttgttgaagatgtcattcat |
393 |
Q |
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| T |
38921035 |
aatattagatatccgtttatcgctaagcactggtgagtaatgaggctttaatgaacatgtttttatatggaaactccttttgttgaagatgtcattcat |
38921133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 54 - 272
Target Start/End: Original strand, 10544653 - 10544869
Alignment:
| Q |
54 |
acgttcttcgggccggagataagtggattctcaacaatccatgtnnnnnnntgaggtatgaataagttatttattgttgatttcccaaccataaacattt |
153 |
Q |
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| T |
10544653 |
acgttctacgggccggaggtg-gtggattctcaacaatccatgtaaaaaa-tgaggtatgaataagttatttattgttaattttccgaccataaacattt |
10544750 |
T |
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| Q |
154 |
gtttgctatgcagccatctggatgcttgtttaagtagattatagagatagacagacaatgacattaagctaagctggtggtacccatagaaactaagatt |
253 |
Q |
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||||| |||| || ||||||||||| ||||| ||||| |||||||||||||||| || || |||||||||||||||||||||||||||| |||||| ||| |
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| T |
10544751 |
gtttgttatgaagtcatctggatgcatgttttagtaggttatagagatagacaggcagtggcattaagctaagctggtggtacccataggaactaaaatt |
10544850 |
T |
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| Q |
254 |
ttaatgcatgtttcagtat |
272 |
Q |
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||||||| ||||| ||||| |
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| T |
10544851 |
ttaatgcttgtttgagtat |
10544869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 334 - 393
Target Start/End: Original strand, 10545135 - 10545194
Alignment:
| Q |
334 |
atgaggctttaatgaacatgtttttatatggaaactccttttgttgaagatgtcattcat |
393 |
Q |
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||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
10545135 |
atgaggctttactaaacatatttttatatggaaactccttttgttgaagatgtcattcat |
10545194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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