View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2180_low_20 (Length: 391)
Name: NF2180_low_20
Description: NF2180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2180_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 381
Target Start/End: Original strand, 40481262 - 40481622
Alignment:
| Q |
19 |
ccaactagctctacatgctgaatattcatggagatgcatgcatgctatccatgattgtgttgtgtactattttcttatagttttcttttttctttaattg |
118 |
Q |
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| T |
40481262 |
ccaactaactctacatgctgaatattcatggagatgcatgcatgctatgcatgattgtgttgtgtactattttcttatagttttcttttttctttaattg |
40481361 |
T |
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| Q |
119 |
ttgttcattatgtagtcgaggttacttttgcagtgatgttttacttgagtgaaaaaattcccatttttcatgatggggtttgtatttgtatcatccactt |
218 |
Q |
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| T |
40481362 |
ttgttcattatgtagtcgagcttacttttgcagtgatgttttacttgagtgaaaaatttcccatttttcatgatggggtttgtatttgtatcatccactt |
40481461 |
T |
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| Q |
219 |
atattaccagctaacctaatgaataaatgtttcatcttaatttttcacaaggtttttcaatttcaatgggatgatgaaaattatgtgattattcaaaatc |
318 |
Q |
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| T |
40481462 |
atattaccagctaacctaatgaataaatgtttcatcttaatttttcacaagttttttcaatttcaatgggatgatgaaaattatgtgattattcaaaatc |
40481561 |
T |
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| Q |
319 |
aatatctatgctatttcatttccagaatgaaatatatatacattcaggtattacttacctatg |
381 |
Q |
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| T |
40481562 |
aatatctatgctatttcatttccagaatgaa--atatatacattcaggtattacttacctatg |
40481622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 116 - 327
Target Start/End: Original strand, 40491915 - 40492120
Alignment:
| Q |
116 |
ttgttgttcattatgtagtcgaggttacttttgcagtgatgttttacttgagtgaaaaaattc-ccatttttcatgatggggtttgtatttgtatcatcc |
214 |
Q |
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| T |
40491915 |
ttgttgttcatcatgtagtcgaggttgcttttgcaatgttgttttgctagtgtgaaatttttttccattttccatg---gggtttgtgtttgtatcgtcc |
40492011 |
T |
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| Q |
215 |
acttatattaccagctaacctaatgaataaatgtttcatcttaatttttcacaaggtttttcaatttcaatgggatgatgaaaattatgtgattattcaa |
314 |
Q |
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| T |
40492012 |
gcttatactaccagcatacctaatgaagaactatttcatctt-atttttcacaaggtttttgaatttcaatgg---gatgaaaattatttaattattcaa |
40492107 |
T |
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| Q |
315 |
aatcaatatctat |
327 |
Q |
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| T |
40492108 |
aatcaatatctat |
40492120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 40491791 - 40491835
Alignment:
| Q |
19 |
ccaactagctctacatgctgaatattcatggagatgcatgcatgc |
63 |
Q |
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| T |
40491791 |
ccaactagctctacatgctgaatattcatggaaatgcatgcatgc |
40491835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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