View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2180_low_21 (Length: 390)
Name: NF2180_low_21
Description: NF2180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2180_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 348
Target Start/End: Original strand, 30350500 - 30350833
Alignment:
| Q |
18 |
aatttatctatgtagtgtacttcatttcgtagagggaaatattctgatattgtttctatgatattgattcatata----ggttacgcaaatgctgaagat |
113 |
Q |
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| T |
30350500 |
aatttatctatgcagtgtacttcatttcgtagagggaaatattctgatattgtttcattgatattgattcatatatataggttatgcaaatgctgtaggt |
30350599 |
T |
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| Q |
114 |
ggagaaaaaggtctcggatgttgtggcattggtgttggatgggtgttgtaagtaaaaaataattttccttgtaattacatattagtttgcaatattagtt |
213 |
Q |
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| T |
30350600 |
ggagaaaaaggtgtcggatgttgtggcattggtgttggatgggtgttgtaagtaaaaaataattttccttgtaattacatattagtttgcaatattagtt |
30350699 |
T |
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| Q |
214 |
ttaaaaatacacatttctatctttatcttatnnnnnnnntggaccgaaactaaactataattaattgtaaaattttccttgttatcttatatcctttatt |
313 |
Q |
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| T |
30350700 |
ttaaaaatacatatttctatctttatcttat-aaaaaaatggaccgaaactaaactataattaattgtagaattttccttgttatcttatatcctttatt |
30350798 |
T |
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| Q |
314 |
tctttgtccatgtttgtttgcataaaccacttaac |
348 |
Q |
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| T |
30350799 |
tctttgtccatgtttgttggcataaaccacttaac |
30350833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 72
Target Start/End: Original strand, 30337891 - 30337930
Alignment:
| Q |
33 |
tgtacttcatttcgtagagggaaatattctgatattgttt |
72 |
Q |
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| T |
30337891 |
tgtacttcatttcatagagggaaatattttgatattgttt |
30337930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 30337981 - 30338033
Alignment:
| Q |
117 |
gaaaaaggtctcggatgttgtggcattggtgttggatgggtgttgtaagtaaa |
169 |
Q |
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| T |
30337981 |
gaaaaacgtcttgggtgtggtggtattggtgttggctgggtgttgtaagtaaa |
30338033 |
T |
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