View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2180_low_22 (Length: 377)
Name: NF2180_low_22
Description: NF2180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2180_low_22 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 17 - 377
Target Start/End: Original strand, 39553038 - 39553398
Alignment:
| Q |
17 |
aataaacaaacaaatgaatttagtagcacaaactttaattgatgaggtaatcccaagagattggtctaaagaaatggggagcatgggcctccatgaagtg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
39553038 |
aataaacaaacaaatgaatttagtagcacaaactttaattgatgaggtaatcccaagagattggtctaaagaaatggggagcttgagcctccatgaagtg |
39553137 |
T |
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| Q |
117 |
caagtgtcccttaggaaggtgcatgtagagcaaccaatcaccattccttttagggcttggcattggcataacatagccagcactacctccccaaggaaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39553138 |
caagtgtcccttaggaaggtgcatgtagagcaaccaatcaccattccttttagggcttggcattggcataacatagccagcactacctccccaaggaaaa |
39553237 |
T |
|
| Q |
217 |
tgataagatccaaacacaggcttcccccatccaaaatcaaccttcgactctggaaacctctgccctgaagataccacaaatgttggtccttcttctccac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
39553238 |
tgataagatccaaacacaggcttcccccatccaaaatcaaccttcgactctggaaacctctgccctgaagatacaacaaatgttggtccttcttctccac |
39553337 |
T |
|
| Q |
317 |
cagtgctgccacaataaatcctagccaatcccggaactggtcgatgctcttccacccaatc |
377 |
Q |
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| T |
39553338 |
cagtgctgccacaataaatcctagccaatccaggaactggtcgatgctcttccacccaatc |
39553398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 48 - 377
Target Start/End: Original strand, 39543050 - 39543379
Alignment:
| Q |
48 |
actttaattgatgaggtaatcccaagagattggtctaaagaaatggggagcatgggcctccatgaagtgcaagtgtcccttaggaaggtgcatgtagagc |
147 |
Q |
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| T |
39543050 |
actttaattaaggaggtaatcccaagagactggtctaaagaaatgaggggcttggacctccatgaagtgcaagtgtcccttaggaaggtgcatgtagagc |
39543149 |
T |
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| Q |
148 |
aaccaatcaccattccttttagggcttggcattggcataacatagccagcactacctccccaaggaaaatgataagatccaaacacaggcttcccccatc |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39543150 |
aaccaatcaccattccttttagggcttggcattggcataacatagccagcactacctccccaaggaaaatgataagatccaaacacaggcttcccccatc |
39543249 |
T |
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| Q |
248 |
caaaatcaaccttcgactctggaaacctctgccctgaagataccacaaatgttggtccttcttctccaccagtgctgccacaataaatcctagccaatcc |
347 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39543250 |
caaaatcaaccttcgactctggaaacctctgccctgaagataccacaaatgttggtccttcttctccaccagtgctgccacaataaatcctagccaatcc |
39543349 |
T |
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| Q |
348 |
cggaactggtcgatgctcttccacccaatc |
377 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
39543350 |
aggaactggtcgatgctcttccacccaatc |
39543379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 46 - 377
Target Start/End: Original strand, 39586174 - 39586505
Alignment:
| Q |
46 |
aaactttaattgatgaggtaatcccaagagattggtctaaagaaatggggagcatgggcctccatgaagtgcaagtgtcccttaggaaggtgcatgtaga |
145 |
Q |
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||||||||||||| || |||||||| |||||||||||||||||||||||||| | ||| ||||||| ||||||| | |||||||||| | |||||||| |
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| T |
39586174 |
aaactttaattgagaagataatcccatgagattggtctaaagaaatggggagcttcagccaccatgaaatgcaagtattccttaggaagattcatgtaga |
39586273 |
T |
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| Q |
146 |
gcaaccaatcaccattccttttagggcttggcattggcataacatagccagcactacctccccaaggaaaatgataagatccaaacacaggcttccccca |
245 |
Q |
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||||||||||||||||||||||||| || |||||||||||||| ||||| ||| ||| || ||||||| |||||||||||||| ||| ||||||||||| |
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| T |
39586274 |
gcaaccaatcaccattccttttaggactaggcattggcataacgtagcccgcatcaccaccacaaggaatatgataagatccaaccacgggcttccccca |
39586373 |
T |
|
| Q |
246 |
tccaaaatcaaccttcgactctggaaacctctgccctgaagataccacaaatgttggtccttcttctccaccagtgctgccacaataaatcctagccaat |
345 |
Q |
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||| ||||| ||||||||||||| |||||| ||||| ||||| ||||||||||| ||||| ||| |||||||||| || ||||||||||| |||||| |
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| T |
39586374 |
tccgaaatctaccttcgactctgaaaacctttgcccagaagacaccacaaatgtcggtccatctgctccaccagttactccgcaataaatccttgccaat |
39586473 |
T |
|
| Q |
346 |
cccggaactggtcgatgctcttccacccaatc |
377 |
Q |
| |
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|||||||| ||||||||||||||||||||||| |
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| T |
39586474 |
cccggaaccggtcgatgctcttccacccaatc |
39586505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 150 - 296
Target Start/End: Original strand, 17502989 - 17503135
Alignment:
| Q |
150 |
ccaatcaccattccttttagggcttggcattggcataacatagccagcactacctccccaaggaaaatgataagatccaaacacaggcttcccccatcca |
249 |
Q |
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|||||||||||||||| |||||||||||||||||| ||||| ||||| |||||||||||||||||| || ||| |||||||| || ||||||||| |
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| T |
17502989 |
ccaatcaccattccttagagggcttggcattggcatcacataaccagcttcacctccccaaggaaaatggtaggatgcaaacacaacttttccccatcca |
17503088 |
T |
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| Q |
250 |
aaatcaaccttcgactctggaaacctctgccctgaagataccacaaa |
296 |
Q |
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||||| ||||| || ||||| || ||||| |||||||||||||| |
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| T |
17503089 |
aaatccaccttgtcttccggaaatctttgcccggaagataccacaaa |
17503135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 150 - 296
Target Start/End: Original strand, 17474875 - 17475021
Alignment:
| Q |
150 |
ccaatcaccattccttttagggcttggcattggcataacatagccagcactacctccccaaggaaaatgataagatccaaacacaggcttcccccatcca |
249 |
Q |
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|||||||||||||||| |||||||||||||||||| ||||| |||| ||| ||||| |||||||| || ||| |||||||| || ||||||||| |
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| T |
17474875 |
ccaatcaccattccttaaagggcttggcattggcatcacataaccagtttcaccaccccatggaaaatggtaggatgcaaacacaacttttccccatcca |
17474974 |
T |
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| Q |
250 |
aaatcaaccttcgactctggaaacctctgccctgaagataccacaaa |
296 |
Q |
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||||| ||||| |||||||| || ||||| |||||||||||||| |
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| T |
17474975 |
aaatccaccttgtcttctggaaatctttgcccggaagataccacaaa |
17475021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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