View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2180_low_29 (Length: 341)
Name: NF2180_low_29
Description: NF2180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2180_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 5941886 - 5942128
Alignment:
| Q |
13 |
aatattaaattgaccatacaataatagtggaccaacattgataggttacatttcttgtagttttgtacatattaaaactaacattagctttaatgtacac |
112 |
Q |
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| T |
5941886 |
aatattaaattgaccatacaataatagtggaccaacattgataggttacatttcttgtagttttgtacatattaaaaccaacattagctttaatgtacac |
5941985 |
T |
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| Q |
113 |
cactttatttgaaactgatgatgcaccaaactcaccaaaccattgatttcagtttgatatgacacgaaatcttaattttgatttcctgtttgggaaacac |
212 |
Q |
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| T |
5941986 |
cactttatttgaaactgatgatgcaccagactcaccaaaccattgatttcagtttgatatgacacgaaatcttaattttgatttcctgtttgggaaacac |
5942085 |
T |
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| Q |
213 |
ctccattgagttgcagtcagatatgttagatgtgtttcaaatt |
255 |
Q |
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| T |
5942086 |
ctccattgagttgcagtcagatatgttagatgtgtttcaaatt |
5942128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 285 - 324
Target Start/End: Original strand, 5942158 - 5942197
Alignment:
| Q |
285 |
tatcccaggaagtttcttgatagaaaagagatacataaat |
324 |
Q |
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| T |
5942158 |
tatcccaggaagtttcttgatagaaaagagatacataaat |
5942197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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