View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2180_low_3 (Length: 639)
Name: NF2180_low_3
Description: NF2180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2180_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 4 - 629
Target Start/End: Complemental strand, 3158576 - 3157970
Alignment:
| Q |
4 |
aaaacatgtacaaggcccactcttcaaaaccatattaatacaaggacctgaaggacctcatatatctttctactctgagtttgcaagtattatttgagga |
103 |
Q |
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|||||||| || ||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
3158576 |
aaaacatggaccaggcccactctgcaaaaccatagtaatacaaggacctgaaggacctcatatatctgtctactctcagtttgcaagtattatttgagga |
3158477 |
T |
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| Q |
104 |
cgatagtgcctattacaagttacaactcagtatgtcaggtaaacagttgaatcatcgccaaaatagtctttgcaaatgcagatatcagttaaaagtttta |
203 |
Q |
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| T |
3158476 |
cga------------caagttacaactcagtatgtcaggtaaacagttgaatcatcgctaaaatagtctttgcaaatgcagatatcagttaaaagtttta |
3158389 |
T |
|
| Q |
204 |
agaactaaattgataactttcnnnnnnnnnnnnnnccagaactaaatgatatctgcgttatgaatgaactattaaatatgataatgaggattaggtattt |
303 |
Q |
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| T |
3158388 |
agaactaaattgatatctttcaaaaaaaaaaaa----aaaactaactgatatctgcgttatgaatgaactattaaatatgataatgaggattaggtattt |
3158293 |
T |
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| Q |
304 |
ggtcgatccgtaaaatatagtatgacttagaacttgattttatataagttatttcgaaaaaacgtttgagtttatagtttatcattttttatattaatgt |
403 |
Q |
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| T |
3158292 |
ggtcgatccgtaaaatatagtatgacttagaacttgattttatataagttatttc-aaaaaatgtttgagtttatagtttatcattttttatattaatgt |
3158194 |
T |
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| Q |
404 |
cattcatagttatcatattattcaacgattaattttgtcaaacactacaaatttaatcatctaacttatcacttattatttannnnnnnnnnnnnnatca |
503 |
Q |
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| T |
3158193 |
cattcatagttatcatattattcaacgattaattttgtccaacactacaaatttaatcatctaacttatcacttattattta--ttatttttttttatca |
3158096 |
T |
|
| Q |
504 |
aacaacctttataggcataacttgatctatctttgcttatatcttagagtgacccacgtttttcatccccattccgggtggtgtctttattcttgctcta |
603 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3158095 |
aacaacctttataggcataacttaatctatctttgcttatatcttagagtgacccacgtttttcatccccattccgggtggtgtctttattcttgctcta |
3157996 |
T |
|
| Q |
604 |
ttatgttgatatttctactttctgtg |
629 |
Q |
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| T |
3157995 |
ttatgttgatatttctactttctgtg |
3157970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 392 - 620
Target Start/End: Complemental strand, 3157724 - 3157503
Alignment:
| Q |
392 |
ttatattaatgtcatt-catagttatcatattattcaacgattaattttgtcaaacactacaaatttaatcatctaacttatcacttat-tatttannnn |
489 |
Q |
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| T |
3157724 |
ttatattaatgccatttcatagttatcatattgttcaacaattaattttgacaaacactacaaatttaatcatctaatttatcaattatctattt----- |
3157630 |
T |
|
| Q |
490 |
nnnnnnnnnnatcaaacaacctttataggcataacttgatctatctttgcttatatcttagagtgacccacgtttttcatccccattccgggtggtgtct |
589 |
Q |
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| T |
3157629 |
----ttttttatcaaaaaacctttatacacgtaatttaatctattttagtttatattttagagtgacccacgtttttcatccccattcctggtggtgtct |
3157534 |
T |
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| Q |
590 |
ttattcttgctctattatgttgatatttcta |
620 |
Q |
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| T |
3157533 |
ttatttgtgctcaattatgttgatgtttcta |
3157503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 432 - 472
Target Start/End: Complemental strand, 25177910 - 25177870
Alignment:
| Q |
432 |
ttaattttgtcaaacactacaaatttaatcatctaacttat |
472 |
Q |
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| T |
25177910 |
ttaattttgtcaaacactgcaaattcaatcatctaatttat |
25177870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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