View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2180_low_32 (Length: 323)
Name: NF2180_low_32
Description: NF2180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2180_low_32 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 24 - 306
Target Start/End: Complemental strand, 41359521 - 41359240
Alignment:
| Q |
24 |
gatattgtggttacaatggagtcgctggaaaattcaaaattattcaattgcaaacaacaatttaaaaccatgattgagtgcctatattaatgagaaagta |
123 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41359521 |
gatattgtggttacaatggagccgc-ggaaaattcaaaattattcaattgcaaacaacaatttaaaaccatgattgagtgcctatattattgagaaagta |
41359423 |
T |
|
| Q |
124 |
ttatgaacattgtctcaaatacaattatttatgtttataaacactgctcatgcaaaacagactctgaccatttagtacctcgacaaaatgattctatttt |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41359422 |
ttatgaacattgtctcaaatacaattatttatgtttataaacactgctcatgcaaaacagactctgaccatttagtacctcgacaaaatgattctatttt |
41359323 |
T |
|
| Q |
224 |
tctttatagtcaacagaggtaaatnnnnnnncagagataatggctattacctgtcgcaaatgataaacatcctcactcgttat |
306 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41359322 |
tctttatagtcaacagaggtaaataaaaaaacagagataatggttattacctgtcgcaaatgataaacatcctcactcgttat |
41359240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University