View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2180_low_35 (Length: 314)
Name: NF2180_low_35
Description: NF2180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2180_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 34090641 - 34090343
Alignment:
| Q |
1 |
tggtacggactaaacgatgtagtatatgaagcattaaaaaaccttgtaaatttaggattatgtgaagttannnnnnnattgctaggattataggtaaagt |
100 |
Q |
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| T |
34090641 |
tggtacggactaaacgatgtagtatatgaagcattaaaaaaccttgtaaatttaggattatgtgaagttatttttttattgctaggattatatgtaaagt |
34090542 |
T |
|
| Q |
101 |
tgattataatttttgtgagcgttaaatattactgcattgttaatttaaaatgtcaaagatataagttagttgagttttgagttatgtgatttaaagttta |
200 |
Q |
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||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34090541 |
tgattataatttttgtgagtgttgaatattcctgcattgttaatttaaaatgtcaaagatataagttagttgagttttgagttatgtgatttaaagttta |
34090442 |
T |
|
| Q |
201 |
agtgagttgttagt-nnnnnnnnttctattaaattcaaatcgtattttaagctgaattcattcattttaagtcgagtcaagtgaaattaagttcgaatt |
298 |
Q |
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|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34090441 |
agtgagttgttagtaaaaaaaaattgtattaaattcaaatcgtattttaagctgaattcattcattttaagtcgagtcaagtgaaattaagttcgaatt |
34090343 |
T |
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