View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2180_low_36 (Length: 305)
Name: NF2180_low_36
Description: NF2180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2180_low_36 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 29 - 288
Target Start/End: Original strand, 36821900 - 36822142
Alignment:
| Q |
29 |
cagatacacattattagagttcgcaaaaactgtaactatgccattacctgccataagaaatttgcaaacggtaaataatacaattcacattgaaaattaa |
128 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36821900 |
cagatacacattattagagttcacaaaaactgtaactatgccattacctgccataagaaatttgcaaacggtaaataatacaattcacattgaaaattaa |
36821999 |
T |
|
| Q |
129 |
tgtagttgagtttacacaattttgactctgttaacgatgaactcagttgatttaaccatatttattcatacacatgattaatcaagtgtgacatgtgtat |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36822000 |
tgtagttgagtttacacaattttgactctgttaacgatgaactcagttgatttaaccatatttattcatacacatgattaatcaagtgtgaca------- |
36822092 |
T |
|
| Q |
229 |
gaaaaattggtgaccatttgatttcaaaatcagataagagagaaatacccacccaagaat |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36822093 |
----------tgaccatttgatttcaaaatcagataagagagaaatacccacccaagaat |
36822142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University