View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2180_low_4 (Length: 607)

Name: NF2180_low_4
Description: NF2180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2180_low_4
NF2180_low_4
[»] chr3 (3 HSPs)
chr3 (7-221)||(36960308-36960521)
chr3 (322-472)||(36960059-36960210)
chr3 (533-607)||(36959944-36960018)
[»] chr2 (3 HSPs)
chr2 (344-504)||(1347439-1347602)
chr2 (533-607)||(1347336-1347410)
chr2 (19-188)||(1347772-1347955)
[»] chr8 (3 HSPs)
chr8 (344-488)||(1916880-1917027)
chr8 (19-188)||(1917197-1917380)
chr8 (533-607)||(1916774-1916848)
[»] chr5 (3 HSPs)
chr5 (402-506)||(40508686-40508791)
chr5 (7-81)||(40509170-40509244)
chr5 (540-606)||(40508586-40508652)


Alignment Details
Target: chr3 (Bit Score: 167; Significance: 4e-89; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 7 - 221
Target Start/End: Complemental strand, 36960521 - 36960308
Alignment:
Q  7 tcgaagaatatgtcataaggtcctcattttagttaagaattcaattattaagcaccgacaatgtaaaacattttttacaaatgcatttagtcaaatctca 106  Q
    ||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||| ||||||||||    
T  36960521 tcgaacaacatgtcataaggtgctcattttagttaagaattcaattattaagcaccgacaatgcaaaacattttt-acacatgcatttaatcaaatctca 36960423  T
Q  107 cttttataagttagttagtaaagtatttataaaatatctatttttcatgttgtgtttggacgcatgtgtaaaaatattttactataaaattacatagaaa 206  Q
    |||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  36960422 cttttataagttagttagtaaagtattcgtaaaatacctatttttcatgttgtgtttggatgcatgtgtaaaaatattttactataaaattacatagaaa 36960323  T
Q  207 ttaatttcatatcac 221  Q
    |||||||||||||||    
T  36960322 ttaatttcatatcac 36960308  T

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Target: chr3; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 322 - 472
Target Start/End: Complemental strand, 36960210 - 36960059
Alignment:
Q  322 gaacaatagcccttagcttac-gtagaaggagtagtgcacaccaccaataaaaatagagcaagaagtgttgagagagaaataagattttgtcattaattt 420  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||     
T  36960210 gaacaatagcccttagcttactgtagaaggagtagttcacaccaccaataaaaatagagcaagaagtgttgagagagaaataaaattttgtcattaatta 36960111  T
Q  421 cagatttgccattaatgaaaactgtgcatttctccgtgttttcagtttttgg 472  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  36960110 cagatttgccattaatgaaaaatgtgcatttctccgtgttttcagtttttgg 36960059  T

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Target: chr3; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 533 - 607
Target Start/End: Complemental strand, 36960018 - 36959944
Alignment:
Q  533 aaaaacagataattggaaaacaatttccaaaaatacttttataaaattgtattatcaaacaggttttttattttc 607  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  36960018 aaaaacagataattggaaaacaatttccaaaaacacttttataaaattgtattatcaaacaggttttttattttc 36959944  T

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Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 344 - 504
Target Start/End: Complemental strand, 1347602 - 1347439
Alignment:
Q  344 tagaaggagtagtgcacaccaccaataaaaatagagcaagaagtgttgagagagaa--ataagattttgtcattaatttcagatttgccattaatgaaaa 441  Q
    ||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||  | ||||||||  |||||||| ||  |||||||||||||||||    
T  1347602 tagaacgagtagtgcacactaccaatagaaatagagcaagaagtgttgagagagaaacaaaagattttaccattaattacaagtttgccattaatgaaaa 1347503  T
Q  442 ctgtgca-tttctccgtgttttcagtttttggcaagagataagcaaaattggaaagcaaaacaa 504  Q
     |||||| ||||| ||||||||| ||||||||||||||| ||||||||||| ||||||||||||    
T  1347502 atgtgcattttctgcgtgttttctgtttttggcaagagaaaagcaaaattgaaaagcaaaacaa 1347439  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 533 - 607
Target Start/End: Complemental strand, 1347410 - 1347336
Alignment:
Q  533 aaaaacagataattggaaaacaatttccaaaaatacttttataaaattgtattatcaaacaggttttttattttc 607  Q
    |||||| ||||| |||||||||||||||||||| |||||| ||||| | ||||||||||||||||||||||||||    
T  1347410 aaaaactgataaatggaaaacaatttccaaaaacacttttctaaaactttattatcaaacaggttttttattttc 1347336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 1347955 - 1347772
Alignment:
Q  19 tcataaggtcctcattttagttaagaattcaattattaagcaccgacaatgtaaaacattttttacaaatgcatttagtcaaatc-----------tcac 107  Q
    |||||| || ||||||||||||||||||| ||||| |||||||||||||||||||| |||||| | | || |||| | |||||||           ||||    
T  1347955 tcataatgtgctcattttagttaagaatttaattagtaagcaccgacaatgtaaaatattttt-atacatacattcaatcaaatcattttatgatatcac 1347857  T
Q  108 t---tttataagttagttagtaaagtattta-taaaatatctatttttcatgttgtgtttggacgcatgtgtaaaaatattttac 188  Q
    |   ||||||||||||||| |||| |||||  ||||||| ||||||||||||||||| ||||| |||||| ||||||||||||||    
T  1347856 taattttataagttagttactaaaatatttcgtaaaatacctatttttcatgttgtggttggatgcatgtataaaaatattttac 1347772  T

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Target: chr8 (Bit Score: 73; Significance: 5e-33; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 344 - 488
Target Start/End: Complemental strand, 1917027 - 1916880
Alignment:
Q  344 tagaaggagtagtgcacaccaccaataaaaatagagcaagaagtgttgagagagaa--ataagattttgtcattaatttcagatttgccattaatgaaaa 441  Q
    ||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||  | ||||||||  |||||||| ||  |||||||||||||||||    
T  1917027 tagaacgagtagtgcacactaccaatagaaatagagcaagaagtgttgagagagaaacaaaagattttaccattaattacaagtttgccattaatgaaaa 1916928  T
Q  442 ctgtgca-tttctccgtgttttcagtttttggcaagagataagcaaaa 488  Q
    ||||||| ||||||| | ||||  ||||||||||||||| ||||||||    
T  1916927 ctgtgcattttctccttattttttgtttttggcaagagaaaagcaaaa 1916880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 1917380 - 1917197
Alignment:
Q  19 tcataaggtcctcattttagttaagaattcaattattaagcaccgacaatgtaaaacattttttacaaatgcatttagtcaaatc-----------tcac 107  Q
    |||||| || ||||||||||||||||||| ||||| |||||||||||||||||||| |||||| | | || |||| | |||||||           ||||    
T  1917380 tcataatgtgctcattttagttaagaatttaattagtaagcaccgacaatgtaaaatattttt-atacatacattcaatcaaatcattttatgatatcac 1917282  T
Q  108 t---tttataagttagttagtaaagtattta-taaaatatctatttttcatgttgtgtttggacgcatgtgtaaaaatattttac 188  Q
    |   ||||||||||||||| |||| |||||  ||||||| ||||||||||||||||| ||||| |||||| ||||||||||||||    
T  1917281 taattttataagttagttactaaaatatttcgtaaaatacctatttttcatgttgtggttggatgcatgtataaaaatattttac 1917197  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 533 - 607
Target Start/End: Complemental strand, 1916848 - 1916774
Alignment:
Q  533 aaaaacagataattggaaaacaatttccaaaaatacttttataaaattgtattatcaaacaggttttttattttc 607  Q
    |||||| ||||| |||||||||||||||||||| |||||| ||||| | ||||| ||||||||||||||||||||    
T  1916848 aaaaactgataaatggaaaacaatttccaaaaacacttttctaaaactttattaccaaacaggttttttattttc 1916774  T

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Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 402 - 506
Target Start/End: Complemental strand, 40508791 - 40508686
Alignment:
Q  402 aagattttgtcattaatttcagatttgccattaatgaaaactgtgcattt-ctccgtgttttcagtttttggcaagagataagcaaaattggaaagcaaa 500  Q
    ||||||||  |||||||| ||| ||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||| || |||||||| ||||||||    
T  40508791 aagattttaccattaattacaggtttgccattaatgaaaactgtgcattttctccgtattttctgtttttggcaagagaaaaacaaaattgaaaagcaaa 40508692  T
Q  501 acaacc 506  Q
    ||||||    
T  40508691 acaacc 40508686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 40509244 - 40509170
Alignment:
Q  7 tcgaagaatatgtcataaggtcctcattttagttaagaattcaattattaagcaccgacaatgtaaaacattttt 81  Q
    ||||| |||| ||||||| || ||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  40509244 tcgaacaatacgtcataatgtgctcattttagttaagaatttaattagtaagcaccgacaatgtaaaacattttt 40509170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 540 - 606
Target Start/End: Complemental strand, 40508652 - 40508586
Alignment:
Q  540 gataattggaaaacaatttccaaaaatacttttataaaattgtattatcaaacaggttttttatttt 606  Q
    ||||| |||||||||||||||||||| |||||| ||||| ||||||| |||||||||||||||||||    
T  40508652 gataaatggaaaacaatttccaaaaacacttttctaaaactgtattaccaaacaggttttttatttt 40508586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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