View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2180_low_40 (Length: 287)
Name: NF2180_low_40
Description: NF2180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2180_low_40 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 11038478 - 11038761
Alignment:
| Q |
1 |
tataattaaagacgtaacctgagaccatataacgatgctgaaaagcaaccaatgaatataaataggtcaaacaagccaaatacatatgaactctaatttt |
100 |
Q |
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| T |
11038478 |
tataattaaagacgtaacctgagaccatataacgatgccgagaagcaaccaatgaatataaataggtcaaacaagccaaatacatatgaactttaatttt |
11038577 |
T |
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| Q |
101 |
attttctctgaatgatcaaatatgattggctctataccacttgttagtaccaaacttgattttaaaacctggaattaatcacgttaaccatcggagataa |
200 |
Q |
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| T |
11038578 |
tttt---cttaatgataaaatatgattggctctataccacttgttagtaccaaacttgattttaaaacctgaaattaatcacgttaaccatcggagataa |
11038674 |
T |
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| Q |
201 |
catatcaatatgcggaagcatagctaaattcataatcgaatattgttgatattgtatggcctttcagatcaacacacactctcactt |
287 |
Q |
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| T |
11038675 |
catatcaatatgcggaagcatagctaaattcataatcgaatattgttgatattgtatggcctttcagatcaacacacactctcactt |
11038761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 63 - 287
Target Start/End: Complemental strand, 11074831 - 11074611
Alignment:
| Q |
63 |
taggtcaaacaagccaaatacatatgaactctaattttattttctctgaatgatcaaatatgattggctctataccacttgttagtaccaaacttgattt |
162 |
Q |
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| T |
11074831 |
taggtcaaacaagccaaatacatatgaactat--ttttgttttctcc--atgatcaaatatgattggctctataccacttgttataacaaaacttgattt |
11074736 |
T |
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| Q |
163 |
taaaacctggaattaatcacgttaaccatcggagataacatatcaatatgcggaagcatagctaaattcataatcgaatattgttgatattgtatggcct |
262 |
Q |
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| T |
11074735 |
taaaatctagaattaatcatgttaaccatcaggtataacatattaatacgcggaagcatatctcaattcaaaatcgattattattgatgtggtatgacct |
11074636 |
T |
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| Q |
263 |
ttcagatcaacacacactctcactt |
287 |
Q |
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| T |
11074635 |
ttgagatcaaaaaacactttcactt |
11074611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 63 - 251
Target Start/End: Complemental strand, 7849463 - 7849279
Alignment:
| Q |
63 |
taggtcaaacaagccaaatacatatgaactctaattttattttctctgaatgatcaaatatgattggctctataccacttgttagtaccaaacttgattt |
162 |
Q |
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|||||||||||||||||||||||||||||| | |||| ||||||| ||||||||||||||||| ||||||||||||||||| || ||||||||||| |
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| T |
7849463 |
taggtcaaacaagccaaatacatatgaactat--ttttgttttctcc--atgatcaaatatgattgactctataccacttgttataacaaaacttgattt |
7849368 |
T |
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| Q |
163 |
taaaacctggaattaatcacgttaaccatcggagataacatatcaatatgcggaagcatagctaaattcataatcgaatattgttgata |
251 |
Q |
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| T |
7849367 |
taaaacctagaattaatcatgttaaccatcagctataacatattaatacgtggaagcatacctcaattcagaatcgattattattgata |
7849279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 67 - 287
Target Start/End: Complemental strand, 11060982 - 11060771
Alignment:
| Q |
67 |
tcaaacaagccaaatacatatgaactctaattttattttctctgaatgatcaaatatgattggctctataccacttgttagtaccaaacttgattttaaa |
166 |
Q |
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| T |
11060982 |
tcaaacaagccagatacatataaactattttttttctttctcc--atgatcaaatatgattcgctttataccacgtgttagaaccaaacttcattttcaa |
11060885 |
T |
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| Q |
167 |
acctggaattaatcacgttaaccatcggagataacatatcaatatgcggaagcatagctaaattcataatcgaatattgttgatattgtatggcctttca |
266 |
Q |
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|||| |||||||||| ||||| |||| || |||||||||| | ||| ||| | |||||||||| | ||||||||||||| |||||||||| || |
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| T |
11060884 |
acctagaattaatcatgttaatcatcaga------atatcaatattcataagagtagttgaattcataat-ggatattgttgatatggtatggccttcca |
11060792 |
T |
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| Q |
267 |
gatcaacacacactctcactt |
287 |
Q |
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|||||||| |||||||||||| |
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| T |
11060791 |
gatcaacatacactctcactt |
11060771 |
T |
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