View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2180_low_41 (Length: 284)
Name: NF2180_low_41
Description: NF2180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2180_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 151; Significance: 6e-80; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 75 - 268
Target Start/End: Original strand, 36737928 - 36738122
Alignment:
| Q |
75 |
cttagaaacaagagttattctcaatcaatcaaaatattaataaacctgct-caactttaggggaggtttattacagacatcacagttagtagagaaacaa |
173 |
Q |
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| T |
36737928 |
cttagaaacaagagttattctcaatcaatcaaaacattaataaacctgctgcagctttaggggaggtttattacagacatcacagttagtagagaaacga |
36738027 |
T |
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| Q |
174 |
aatatatcaatcttctgataaaatttgtcgccttccaaagctccaatcagtgctaaaatttcagtgaaaacaacctggttggcagcagatgctga |
268 |
Q |
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| T |
36738028 |
aatatatcaatcttctgataaaacttgtcgccttccaaagctcccgtcagtgctaaaatttcattgaaaacagcctggttggcatcagatgctga |
36738122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 75 - 268
Target Start/End: Original strand, 36739555 - 36739750
Alignment:
| Q |
75 |
cttagaaacaagagttattctcaatcaatcaaaatattaataaacctgct-caactttaggggaggtttattacagacatcacagttagtagagaaacaa |
173 |
Q |
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| T |
36739555 |
cttagaaacaaaagttattctcaatcagtcaaaacattaataaacctactgcagctttagggggggtttattacagacatcacagttagtagagaaacaa |
36739654 |
T |
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| Q |
174 |
aatatatc-aatcttctgataaaatttgtcgccttccaaagctccaatcagtgctaaaatttcagtgaaaacaacctggttggcagcagatgctga |
268 |
Q |
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| T |
36739655 |
aatatacctaatattttgataaaacttgtcgccttccaaagctcctgtcagtgctaaaatttcaatgaaaacagcctggttggcatcagatgctga |
36739750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 184 - 268
Target Start/End: Original strand, 36722133 - 36722217
Alignment:
| Q |
184 |
tcttctgataaaatttgtcgccttccaaagctccaatcagtgctaaaatttcagtgaaaacaacctggttggcagcagatgctga |
268 |
Q |
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| T |
36722133 |
tcttctgataaaacttgtcgccttctaaagctcctgttagttctaaaatttcagtgaaaacaacctggttggcatcagatgctga |
36722217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 36737866 - 36737903
Alignment:
| Q |
141 |
ttattacagacatcacagttagtagagaaacaaaatat |
178 |
Q |
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| T |
36737866 |
ttattacagacatcacagttagcagagaaacaaaatat |
36737903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 36739286 - 36739326
Alignment:
| Q |
134 |
gggaggtttattacagacatcacagttagtagagaaacaaa |
174 |
Q |
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| T |
36739286 |
gggaggtttattacaggcatcacagttagcagagaaacaaa |
36739326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 27895085 - 27895045
Alignment:
| Q |
34 |
aaaacttaaaaacagtttttgaaaagtaaatcaaacaagcc |
74 |
Q |
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| T |
27895085 |
aaaactaaaaaactgtttttgaaaagtgaatcaaacaagcc |
27895045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 76
Target Start/End: Complemental strand, 36959934 - 36959892
Alignment:
| Q |
34 |
aaaacttaaaaacagtttttgaaaagtaaatcaaacaagccct |
76 |
Q |
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| T |
36959934 |
aaaacttaaaaacagtttttgaaaagtaaatcaaacaagccct |
36959892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 1916764 - 1916719
Alignment:
| Q |
34 |
aaaacttaaaaacagtttttgaaaagtaaatcaaacaagcccttag |
79 |
Q |
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| T |
1916764 |
aaaacttaaaaactgtttttgaaaagtatatcaaacaagcccttag |
1916719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 5962091 - 5962046
Alignment:
| Q |
34 |
aaaacttaaaaacagtttttgaaaagtaaatcaaacaagcccttag |
79 |
Q |
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|||||| |||||||||||||||||| ||||||||||| ||||||| |
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| T |
5962091 |
aaaactgaaaaacagtttttgaaaactaaatcaaacagacccttag |
5962046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 40508575 - 40508535
Alignment:
| Q |
34 |
aaaacttaaaaacagtttttgaaaagtaaatcaaacaagcc |
74 |
Q |
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||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40508575 |
aaaacttaaaaactgtttttgaaaagtaaatcaaacaagcc |
40508535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 30063212 - 30063176
Alignment:
| Q |
34 |
aaaacttaaaaacagtttttgaaaagtaaatcaaaca |
70 |
Q |
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|||||| |||||||||||||||||| ||||||||||| |
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| T |
30063212 |
aaaactgaaaaacagtttttgaaaactaaatcaaaca |
30063176 |
T |
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