View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2180_low_43 (Length: 277)
Name: NF2180_low_43
Description: NF2180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2180_low_43 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 80 - 277
Target Start/End: Original strand, 16113031 - 16113228
Alignment:
| Q |
80 |
aaagactctttcagatgacaccaaaaaaccaagcctatgattgttatgtggctaagtggcttccatgtggaaattagaattattagggttagctgattat |
179 |
Q |
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| T |
16113031 |
aaagactctttcagatgacaccaaaaaaccaagcctatgattgttatgtggctaagtggcttccatgtggaaattagaattattagggttagctgattat |
16113130 |
T |
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| Q |
180 |
aataaaataaattaatatctaaaatatactaactaattattcagtagcatgnnnnnnnggcagaataaggacagagccaacacagaccaaggaccacc |
277 |
Q |
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| T |
16113131 |
aataaaataaattaatatctaaaatatactaactaattattcagtagcatgtttttttggcagaataaggacagagccaacacagaccaaggaccacc |
16113228 |
T |
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