View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2180_low_45 (Length: 258)
Name: NF2180_low_45
Description: NF2180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2180_low_45 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 11037834 - 11038059
Alignment:
| Q |
19 |
acttgactcagccatggtggtgcaggccttaaatttcaactcacaggtgccttgtagattaaggaacagatggaaaaactgtaaaattatgcttaggtct |
118 |
Q |
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| T |
11037834 |
acttgactcagccatggtggtgcaggccttaaattctaactcacatgtgccttgtagattaaggaacagatggaaaaactgtaaaattatgcttaggtct |
11037933 |
T |
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| Q |
119 |
atgaattattttgtttctcatgtttttagagagggtaaccagtgtgcagatggtctagctaatattggactttccatcgatcaattcaccatctagaaca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
11037934 |
atgaattattttgtttctcatgtttttagagagggtaaccagcgtgcagatggtctagctaatattggactttccatcgatcaattcaccatctggaaca |
11038033 |
T |
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| Q |
219 |
catttcctcctagcttgcaggctgtt |
244 |
Q |
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|| ||||||||||||||||||||||| |
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| T |
11038034 |
caattcctcctagcttgcaggctgtt |
11038059 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 24676869 - 24676913
Alignment:
| Q |
127 |
ttttgtttctcatgtttttagagagggtaaccagtgtgcagatgg |
171 |
Q |
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||||||||||||||| ||||||||||| ||||| ||| ||||||| |
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| T |
24676869 |
ttttgtttctcatgtatttagagagggaaaccaatgtacagatgg |
24676913 |
T |
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