View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2180_low_46 (Length: 256)
Name: NF2180_low_46
Description: NF2180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2180_low_46 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 32406241 - 32406016
Alignment:
| Q |
16 |
atcagttaaaaatgatctcaactggtgattggagatcgcgcgattgagatcgaaaactgcgtgatgcagatagcaccaaaaccaaattgtttattattgt |
115 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32406241 |
atcagttaaaaatgatctcaactagtgattggagatcgcgcaattgagatcgaaaactgcgtgatgcagataccaccaaaaccaaattgtttattattgt |
32406142 |
T |
|
| Q |
116 |
tgtttttgaagtaattatagtaaggttgttcatgaatgatgaattcaagtacatgaataa-aaaataggactattgaggaagcaatcaaaagtgcaaaca |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32406141 |
tgtttttgaagtaattatagtaaggttgttcatgaatgatgaattcaagtacatgaataaaaaaataggactattgaggaagcaatcaaaagtgcaaaca |
32406042 |
T |
|
| Q |
215 |
atacaagatatggcttagcagcagga |
240 |
Q |
| |
|
|||||| ||||||||||||||||||| |
|
|
| T |
32406041 |
atacaaaatatggcttagcagcagga |
32406016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 43621638 - 43621696
Alignment:
| Q |
181 |
aggactattgaggaagcaatcaaaagtgcaaacaatacaagatatggcttagcagcagg |
239 |
Q |
| |
|
|||||||||||||||||||| || ||||| || |||||||||||||| |||||||||| |
|
|
| T |
43621638 |
aggactattgaggaagcaattaagagtgctaataatacaagatatggactagcagcagg |
43621696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 43628090 - 43628148
Alignment:
| Q |
181 |
aggactattgaggaagcaatcaaaagtgcaaacaatacaagatatggcttagcagcagg |
239 |
Q |
| |
|
||||||||||||||||| || || ||||| |||||||| ||||||||| |||||||||| |
|
|
| T |
43628090 |
aggactattgaggaagccattaagagtgccaacaataccagatatggcctagcagcagg |
43628148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University