View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2180_low_47 (Length: 253)

Name: NF2180_low_47
Description: NF2180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2180_low_47
NF2180_low_47
[»] chr7 (8 HSPs)
chr7 (3-240)||(39538620-39538857)
chr7 (3-240)||(39365413-39365650)
chr7 (3-164)||(39547984-39548145)
chr7 (3-190)||(39564838-39565013)
chr7 (3-171)||(39349021-39349177)
chr7 (3-65)||(39337938-39338000)
chr7 (101-211)||(39337804-39337914)
chr7 (3-50)||(39589729-39589776)
[»] chr2 (3 HSPs)
chr2 (3-44)||(44211435-44211476)
chr2 (3-44)||(44223597-44223638)
chr2 (3-44)||(44234419-44234460)
[»] chr4 (1 HSPs)
chr4 (16-48)||(2886663-2886695)


Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 3 - 240
Target Start/End: Original strand, 39538620 - 39538857
Alignment:
Q  3 atcaaaggtgattgaatgtggttcaaatggaagaaccattcctcttttcctactatgatttgtctctacaccaactgtttctttcctaccaggtaaagta 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39538620 atcaaaggtgattgaatgtggttcaaatggaagaaccattcctcttttccttctatggtttgtctctacaccaactgtttctttcctaccaggtaaagta 39538719  T
Q  103 ctaggagagatgcttccgcttctgcttttgccatttctcactgtgaagtagttccaatgttatcgataagtttttataagaattgaaatcaacaattact 202  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  39538720 ctaggagagatgcttccgcttctgcttttgccgtttctcactgtgaagtagctccaatgttatccataagtttttataagaattgaaatcaacaattact 39538819  T
Q  203 catcaagacattactaaattttcagtagttattgatga 240  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  39538820 catcaagacattactaaattttcagtagttatttatga 39538857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 3 - 240
Target Start/End: Complemental strand, 39365650 - 39365413
Alignment:
Q  3 atcaaaggtgattgaatgtggttcaaatggaagaaccattcctcttttcctactatgatttgtctctacaccaactgtttctttcctaccaggtaaagta 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||| | | |||||||    
T  39365650 atcaaaggtgattgaatgtggttcaaatggaagaaccattcctcttttccttctatggtttgtctctacaccaactgtttcttgcctatcggataaagta 39365551  T
Q  103 ctaggagagatgcttccgcttctgcttttgccatttctcactgtgaagtagttccaatgttatcgataagtttttataagaattgaaatcaacaattact 202  Q
    || |||||||||||||| ||||| |||| ||| |||| |||||||||||||||||||||||||  ||||||| ||||  |||||||||| || |||||||    
T  39365550 cttggagagatgcttccacttctactttcgccgtttcgcactgtgaagtagttccaatgttattcataagttgttatgtgaattgaaataaaaaattact 39365451  T
Q  203 catcaagacattactaaattttcagtagttattgatga 240  Q
    |||||| |||||||||||||||||||||||||| ||||    
T  39365450 catcaatacattactaaattttcagtagttatttatga 39365413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 3 - 164
Target Start/End: Original strand, 39547984 - 39548145
Alignment:
Q  3 atcaaaggtgattgaatgtggttcaaatggaagaaccattcctcttttcctactatgatttgtctctacaccaactgtttctttcctaccaggtaaagta 102  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| || ||||| ||||||  ||| | | | |||||    
T  39547984 atcaaaggtgattgaatgtggttcaaaagggagaaccattcctcttttcctactatgatttgtctctgcagcaactctttcttgtctatcggatgaagta 39548083  T
Q  103 ctaggagagatgcttccgcttctgcttttgccatttctcactgtgaagtagttccaatgtta 164  Q
    ||||||||| |||||||||||||  |||  ||||||||||||||||||||| ||||||||||    
T  39548084 ctaggagaggtgcttccgcttctaatttctccatttctcactgtgaagtagatccaatgtta 39548145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 190
Target Start/End: Original strand, 39564838 - 39565013
Alignment:
Q  3 atcaaaggtgattgaatgtggttcaaatggaagaaccattcctcttttcctactatgatttgtctctacaccaactgtttctttcctaccaggtaaagta 102  Q
    ||||||||| || |||||||||||||| |||||||||||||| |||||||| ||||||||||| |||    ||||| ||||||  |            ||    
T  39564838 atcaaaggttatagaatgtggttcaaaaggaagaaccattccccttttcctgctatgatttgtttctgaggcaactatttcttgtc------------ta 39564925  T
Q  103 ctaggagagatgcttccgcttctgcttttgccatttctcactgtgaagtagttccaatgttatcgataagtttttataagaattgaaa 190  Q
     |||||||||||||||| ||||| ||||  || |||||||||||||||||| |||||||||||| ||||| | ||||  |||||||||    
T  39564926 ataggagagatgcttccacttctactttcaccgtttctcactgtgaagtagctccaatgttatccataaggtgttatgtgaattgaaa 39565013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 171
Target Start/End: Complemental strand, 39349177 - 39349021
Alignment:
Q  3 atcaaaggtgattgaatgtggttcaaatggaagaaccattcctcttttcctactatgatttgtctctacaccaactgtttctttcctaccaggtaaagta 102  Q
    ||||||||| || |||||||||||||| ||||||||||||||  ||||||||||||||||||| ||  || ||| | ||||||  |            ||    
T  39349177 atcaaaggttatagaatgtggttcaaaaggaagaaccattccctttttcctactatgatttgtttccgcagcaattatttcttgtc------------ta 39349090  T
Q  103 ctaggagagatgcttccgcttctgcttttgccatttctcactgtgaagtagttccaatgttatcgataa 171  Q
    ||||||||||||||||| ||||| ||||  || ||| |||||||||||||| |||||||||||| ||||    
T  39349089 ctaggagagatgcttccacttctactttctccttttttcactgtgaagtagctccaatgttatccataa 39349021  T

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Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 39338000 - 39337938
Alignment:
Q  3 atcaaaggtgattgaatgtggttcaaatggaagaaccattcctcttttcctactatgatttgt 65  Q
    ||||||||| || |||||||||||||| ||||||||||||||  |||||||||||||||||||    
T  39338000 atcaaaggttatagaatgtggttcaaaaggaagaaccattccctttttcctactatgatttgt 39337938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 211
Target Start/End: Complemental strand, 39337914 - 39337804
Alignment:
Q  101 tactaggagagatgcttccgcttctgcttttgccatttctcactgtgaagtagttccaatgttatcgataagtttttataagaattg-aaatcaacaatt 199  Q
    ||||||||||||||||||| ||||| ||||  || ||| |||||||||||| | |||||| ||||| ||||| | ||||  |||||| |||| || ||||    
T  39337914 tactaggagagatgcttcctcttctactttctccttttttcactgtgaagt-ggtccaattttatccataaggtgttatgtgaattgaaaataaaaaatt 39337816  T
Q  200 actcatcaagac 211  Q
    ||||||| ||||    
T  39337815 actcatctagac 39337804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 39589729 - 39589776
Alignment:
Q  3 atcaaaggtgattgaatgtggttcaaatggaagaaccattcctctttt 50  Q
    |||||||||||   ||||||||||||| ||||||||||||||||||||    
T  39589729 atcaaaggtgacacaatgtggttcaaaaggaagaaccattcctctttt 39589776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 44211435 - 44211476
Alignment:
Q  3 atcaaaggtgattgaatgtggttcaaatggaagaaccattcc 44  Q
    |||||| ||||| |||||||||||||||||||||||||||||    
T  44211435 atcaaaagtgatagaatgtggttcaaatggaagaaccattcc 44211476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 44223597 - 44223638
Alignment:
Q  3 atcaaaggtgattgaatgtggttcaaatggaagaaccattcc 44  Q
    |||||| ||||| |||||||||||||||||||||||||||||    
T  44223597 atcaaaagtgatagaatgtggttcaaatggaagaaccattcc 44223638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 44234419 - 44234460
Alignment:
Q  3 atcaaaggtgattgaatgtggttcaaatggaagaaccattcc 44  Q
    |||||| ||||| |||||||||||||||||||||||||||||    
T  44234419 atcaaaagtgatagaatgtggttcaaatggaagaaccattcc 44234460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 2886695 - 2886663
Alignment:
Q  16 gaatgtggttcaaatggaagaaccattcctctt 48  Q
    |||||||||||||| ||||||||||||||||||    
T  2886695 gaatgtggttcaaaaggaagaaccattcctctt 2886663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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