View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2180_low_54 (Length: 236)
Name: NF2180_low_54
Description: NF2180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2180_low_54 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 43399866 - 43399645
Alignment:
| Q |
16 |
ataaccacacttaccattgcaatctgcaacatacaa-gtaaaagataataatctaacaaaatttaacaatttgcaggaacagaaaatatattcaactgaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
43399866 |
ataaccacacttaccattgcaatctgcaacatacaaagtaaaagataataatctaacaaaaattaacaatttgcaggaacagaaaatatattcaactgaa |
43399767 |
T |
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| Q |
115 |
aattaatattatcatccaaactcacatattacatatgtataaacttaaaattgtcaaagtatcattttcattcttgtgttgcaataagttcaattttggt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43399766 |
aattaatattatcatccaaactcacatattacatatgtataaacttaaaattgtcaaagtatcattttcattcttgtgttgcaataagttcaattttggt |
43399667 |
T |
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| Q |
215 |
gattgaaattttgaaatctacc |
236 |
Q |
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|||||||||||||||||||||| |
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| T |
43399666 |
gattgaaattttgaaatctacc |
43399645 |
T |
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