View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2180_low_60 (Length: 227)
Name: NF2180_low_60
Description: NF2180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2180_low_60 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 36006691 - 36006471
Alignment:
| Q |
7 |
ataagtatggagaaaggttggtttctctccttattgcacatatattccattagacttatatctaattaagtttgatagcaggtacaactcaattcacttc |
106 |
Q |
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| T |
36006691 |
ataagtatggagaaaggttggtttctctccttattgcacatatattccattagacttatatctaattaagtttgatagcaggtacaactcaattcacttc |
36006592 |
T |
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| Q |
107 |
accctcaacacacacccattggcccacaaatatgccaacgcagttaatgttaggattgatctcaaggaagtgtgcttcaagtaggttgaacttctgaaag |
206 |
Q |
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| T |
36006591 |
accctcaacacacacccattggcccacaaatatgccaacgcagttaatgttaggattgatctcaaggaagtgtgcttcaagtaggttgaacttctgaaag |
36006492 |
T |
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| Q |
207 |
atgctggagcaagtttcagct |
227 |
Q |
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| T |
36006491 |
atgctggagcaagtttcagct |
36006471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 13 - 227
Target Start/End: Complemental strand, 36010009 - 36009797
Alignment:
| Q |
13 |
atggagaaaggttggtttctctccttattgcacatatattcc-attagacttatatctaattaagtttgatagcaggtacaactcaattcacttcaccct |
111 |
Q |
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||||||||||||||||||||| ||||||| |||| |||| | ||||||||| |||||| |||| ||||||||| ||| |||||||||||||||||| | |
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| T |
36010009 |
atggagaaaggttggtttctc--cttattgaacatttatttcgattagacttgtatctagttaactttgatagcgagta-aactcaattcacttcacctt |
36009913 |
T |
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| Q |
112 |
caacacacacccattggcccacaaatatgccaacgcagttaatgttaggattgatctcaaggaagtgtgcttcaagtaggttgaacttctgaaagatgct |
211 |
Q |
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||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
36009912 |
caacacatacccattggcccacaaagatgccaacgcagttaatgttaggattgatctcaaggaagtgtgcttcaagtaggttgaacttttgaacgatgct |
36009813 |
T |
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| Q |
212 |
ggagcaagtttcagct |
227 |
Q |
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| T |
36009812 |
ggagcaagtttcagct |
36009797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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