View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2180_low_7 (Length: 564)

Name: NF2180_low_7
Description: NF2180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2180_low_7
NF2180_low_7
[»] chr6 (5 HSPs)
chr6 (17-552)||(29408085-29408622)
chr6 (298-498)||(29425621-29425821)
chr6 (299-463)||(29456102-29456266)
chr6 (87-207)||(29425231-29425351)
chr6 (17-61)||(24797495-24797539)
[»] chr2 (5 HSPs)
chr2 (311-362)||(42154698-42154749)
chr2 (315-358)||(42164856-42164899)
chr2 (17-60)||(27501716-27501759)
chr2 (299-358)||(42292497-42292556)
chr2 (305-358)||(18805805-18805858)
[»] chr4 (10 HSPs)
chr4 (97-203)||(25044878-25044984)
chr4 (104-199)||(25002232-25002327)
chr4 (89-203)||(25016026-25016140)
chr4 (298-340)||(25044578-25044620)
chr4 (298-340)||(24984510-24984552)
chr4 (17-75)||(23135379-23135438)
chr4 (18-60)||(24754011-24754053)
chr4 (18-51)||(54495564-54495597)
chr4 (18-73)||(10042929-10042985)
chr4 (298-358)||(25167402-25167462)
[»] chr1 (5 HSPs)
chr1 (17-77)||(25670734-25670795)
chr1 (18-75)||(698791-698849)
chr1 (17-74)||(3483122-3483180)
chr1 (17-75)||(45925575-45925634)
chr1 (17-74)||(49003731-49003789)
[»] chr7 (4 HSPs)
chr7 (17-61)||(26402762-26402806)
chr7 (17-77)||(26803982-26804043)
chr7 (17-61)||(5248613-5248657)
chr7 (17-49)||(47405222-47405254)
[»] chr8 (2 HSPs)
chr8 (17-75)||(33650090-33650149)
chr8 (17-73)||(44254095-44254151)
[»] chr5 (5 HSPs)
chr5 (17-84)||(591180-591248)
chr5 (17-60)||(23129424-23129467)
chr5 (17-60)||(27146954-27146997)
chr5 (18-59)||(40872323-40872364)
chr5 (17-61)||(42265518-42265562)
[»] scaffold0018 (1 HSPs)
scaffold0018 (25-61)||(49015-49051)


Alignment Details
Target: chr6 (Bit Score: 462; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 17 - 552
Target Start/End: Original strand, 29408085 - 29408622
Alignment:
Q  17 caaaaacttactatttaaagttcc-taaacaatgccttaagggcacc-gttaacatttcccattaaattatgtataggtatagatgagctcaatgatcca 114  Q
    |||||||||||||||||||||||| |||||||| |   ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29408085 caaaaacttactatttaaagttccctaaacaatactccaagggcacttgttaacatttcccattaaattatgtataggtatagatgagctcaatgatcca 29408184  T
Q  115 acactctcacttgaagaagcccttgcagatacagccaggattgattacttttataatcatctatattatcttaaatctgcaatcaagtatgtgacatgaa 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29408185 acactctcacttgaagaagcccttgcagatacagccaggattgattacttttataatcatctatattatcttaaatctgcaatcaagtatgtgacatgaa 29408284  T
Q  215 gtaaaagaatannnnnnnnagttattctattgtttatatgaattgtaaggcatgcttaacattttttcactcttcgaatttttcagggatggtgtgaatg 314  Q
    |||||||| |         ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  29408285 gtaaaagatttttttttttagttattctattgtttatatgaattgtaaggcatgcttaacattttttcactctttgaatttttcagggatggtgtgaatg 29408384  T
Q  315 taaaaggatattttgcatggtcattgctcgacaatttcgaatggacattaggctatagagtgaggactggaataaactttgtagattataaaaatggtct 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29408385 taaaaggatattttgcatggtcattgctcgacaatttcgaatggacattaggctatagagtgaggactggaataaactttgtagattataaaaatggtct 29408484  T
Q  415 caaaagatatccaaaaatgtcagccatatggtttagaaatttcctacaaaagaaaaaagttagctatggtgatttgcgctaagatggtcaacttcatcaa 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  29408485 caaaagatatccaaaaatgtcagccatatggtttagaaatttcctacaaaagaaaaaagttagctatggtgatttgcgctaagatggtcaacttcattaa 29408584  T
Q  515 tgatgtgtggcttaaatatgattgcaatgagcaatatt 552  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29408585 tgatgtgtggcttaaatatgattgcaatgagcaatatt 29408622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 298 - 498
Target Start/End: Original strand, 29425621 - 29425821
Alignment:
Q  298 cagggatggtgtgaatgtaaaaggatattttgcatggtcattgctcgacaatttcgaatggacattaggctatagagtgaggactggaataaactttgta 397  Q
    |||||||||||||||||||||||| |||||||||||||||||||| || || || ||||||   |||||||| |    ||||  ||||||| ||||  ||    
T  29425621 cagggatggtgtgaatgtaaaagggtattttgcatggtcattgcttgataactttgaatggggtttaggctacacttcgaggtttggaatatacttcata 29425720  T
Q  398 gattataaaaatggtctcaaaagatatccaaaaatgtcagccatatggtttagaaatttcctacaaaagaaaaaagttagctatggtgatttgcgctaag 497  Q
    ||||| ||  |||| ||||||||||||||||||||||||||  ||||||| |  ||||| |||||| | |||| ||||   ||||||||||  |||||||    
T  29425721 gattacaatgatggcctcaaaagatatccaaaaatgtcagctgtatggttcaagaattttctacaacataaaatagttgcatatggtgattcacgctaag 29425820  T
Q  498 a 498  Q
    |    
T  29425821 a 29425821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 299 - 463
Target Start/End: Complemental strand, 29456266 - 29456102
Alignment:
Q  299 agggatggtgtgaatgtaaaaggatattttgcatggtcattgctcgacaatttcgaatggacattaggctatagagtgaggactggaataaactttgtag 398  Q
    ||||||||||  || || |||||||||||||||||||||||  ||||| | ||||||||| |    ||||| |   |||||  ||||||| |||||||||    
T  29456266 agggatggtgctaacgtgaaaggatattttgcatggtcattcatcgacgacttcgaatgggctaatggctacaccatgaggtttggaatatactttgtag 29456167  T
Q  399 attataaaaatggtctcaaaagatatccaaaaatgtcagccatatggtttagaaatttcctacaa 463  Q
    |||| || |||||  |||||||||||||||||||||| || || |||||||  ||||| ||||||    
T  29456166 attacaataatggcatcaaaagatatccaaaaatgtctgcaatctggtttaagaattttctacaa 29456102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 207
Target Start/End: Original strand, 29425231 - 29425351
Alignment:
Q  87 tataggtatagatgagctcaatgatccaacactctcacttgaagaagcccttgcagatacagccaggattgattacttttataatcatctatattatctt 186  Q
    ||||||||| |||||  | ||||||||||||||  | |||||  ||||||||| |||||||   ||||||||||||| |||| | ||||| || ||||||    
T  29425231 tataggtatggatgactttaatgatccaacacttcctcttgagaaagcccttgaagatacacaaaggattgattactattatgaccatctctactatctt 29425330  T
Q  187 aaatctgcaatcaagtatgtg 207  Q
     || ||||||| |||||||||    
T  29425331 caaactgcaataaagtatgtg 29425351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 24797495 - 24797539
Alignment:
Q  17 caaaaacttactatttaaagttcctaaacaatgccttaagggcac 61  Q
    |||||||||||||||||||||| |||||||||| | |||||||||    
T  24797495 caaaaacttactatttaaagttactaaacaatgtcctaagggcac 24797539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 311 - 362
Target Start/End: Complemental strand, 42154749 - 42154698
Alignment:
Q  311 aatgtaaaaggatattttgcatggtcattgctcgacaatttcgaatggacat 362  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  42154749 aatgtaaaaggatattttgcatggtcattgctcgacaattttgaatggacat 42154698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 315 - 358
Target Start/End: Complemental strand, 42164899 - 42164856
Alignment:
Q  315 taaaaggatattttgcatggtcattgctcgacaatttcgaatgg 358  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  42164899 taaaaggatattttgcatggtcattgctcgacaattttgaatgg 42164856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 27501759 - 27501716
Alignment:
Q  17 caaaaacttactatttaaagttcctaaacaatgccttaagggca 60  Q
    |||||||||||||||||||||| |||||||||| ||||||||||    
T  27501759 caaaaacttactatttaaagttactaaacaatgtcttaagggca 27501716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 299 - 358
Target Start/End: Original strand, 42292497 - 42292556
Alignment:
Q  299 agggatggtgtgaatgtaaaaggatattttgcatggtcattgctcgacaatttcgaatgg 358  Q
    |||||||| || ||| |||||||||||||||||||||| || ||||||||||| ||||||    
T  42292497 agggatggcgtaaatataaaaggatattttgcatggtcgtttctcgacaattttgaatgg 42292556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 358
Target Start/End: Original strand, 18805805 - 18805858
Alignment:
Q  305 ggtgtgaatgtaaaaggatattttgcatggtcattgctcgacaatttcgaatgg 358  Q
    |||||||||||| |||||||||||||||||||  |  |||||||||| ||||||    
T  18805805 ggtgtgaatgtacaaggatattttgcatggtcccttttcgacaattttgaatgg 18805858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 97 - 203
Target Start/End: Complemental strand, 25044984 - 25044878
Alignment:
Q  97 gatgagctcaatgatccaacactctcacttgaagaagcccttgcagatacagccaggattgattacttttataatcatctatattatcttaaatctgcaa 196  Q
    |||||| |||||||||||||||| || ||||||||| |||||  ||||||   ||| |||||||||||||||  |||||| ||||||||| || ||||||    
T  25044984 gatgagttcaatgatccaacactgtcgcttgaagaatcccttatagatactctcagaattgattacttttatcgtcatctttattatcttcaaactgcaa 25044885  T
Q  197 tcaagta 203  Q
    |||||||    
T  25044884 tcaagta 25044878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 104 - 199
Target Start/End: Original strand, 25002232 - 25002327
Alignment:
Q  104 tcaatgatccaacactctcacttgaagaagcccttgcagatacagccaggattgattacttttataatcatctatattatcttaaatctgcaatca 199  Q
    |||| ||||||||| | |||||||||||| |||||  |||||| | ||| |||||||||||||||  |||||| ||||||||| || |||||||||    
T  25002232 tcaacgatccaacattatcacttgaagaatcccttttagatactgacagaattgattacttttatcgtcatctttattatcttcaaactgcaatca 25002327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 89 - 203
Target Start/End: Complemental strand, 25016140 - 25016026
Alignment:
Q  89 taggtatagatgagctcaatgatccaacactctcacttgaagaagcccttgcagatacagccaggattgattacttttataatcatctatattatcttaa 188  Q
    ||||||| || |||||||||||||||||||| |||||||||||||| ||    |||||   ||| |||||||||||||||   ||||| |||||| ||      
T  25016140 taggtatggacgagctcaatgatccaacactatcacttgaagaagcgctaatggatacttacagaattgattacttttatcgccatctttattatgtttc 25016041  T
Q  189 atctgcaatcaagta 203  Q
    |||||||||||||||    
T  25016040 atctgcaatcaagta 25016026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 298 - 340
Target Start/End: Complemental strand, 25044620 - 25044578
Alignment:
Q  298 cagggatggtgtgaatgtaaaaggatattttgcatggtcattg 340  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  25044620 cagggatggtgtgaatgtaaagggatattttgcatggtcattg 25044578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 340
Target Start/End: Complemental strand, 24984552 - 24984510
Alignment:
Q  298 cagggatggtgtgaatgtaaaaggatattttgcatggtcattg 340  Q
    |||||| |||||||||||||| |||||||||||||||||||||    
T  24984552 cagggaaggtgtgaatgtaaagggatattttgcatggtcattg 24984510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 23135438 - 23135379
Alignment:
Q  17 caaaaacttactatttaaagttcctaaacaatgccttaagggcac-cgttaacatttccc 75  Q
    |||||||||||||||||||||| ||||||||||   |||||||||  |||||||||||||    
T  23135438 caaaaacttactatttaaagttactaaacaatgttctaagggcacttgttaacatttccc 23135379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 24754011 - 24754053
Alignment:
Q  18 aaaaacttactatttaaagttcctaaacaatgccttaagggca 60  Q
    ||||| ||||||||||||||| |||||||||||| ||||||||    
T  24754011 aaaaatttactatttaaagtttctaaacaatgccctaagggca 24754053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 54495564 - 54495597
Alignment:
Q  18 aaaaacttactatttaaagttcctaaacaatgcc 51  Q
    ||||||||||||||||||||| ||||||||||||    
T  54495564 aaaaacttactatttaaagttactaaacaatgcc 54495597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 10042929 - 10042985
Alignment:
Q  18 aaaaacttactatttaaagttcctaaacaatgccttaagggcac-cgttaacatttc 73  Q
    |||||||||||||||||||||  |||||||||| |||| |||||  |||||||||||    
T  10042929 aaaaacttactatttaaagttattaaacaatgctttaaaggcacttgttaacatttc 10042985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 298 - 358
Target Start/End: Complemental strand, 25167462 - 25167402
Alignment:
Q  298 cagggatggtgtgaatgtaaaaggatattttgcatggtcattgctcgacaatttcgaatgg 358  Q
    ||||| |||||| |||||||| ||||| ||||||||||| ||| | |||||||| ||||||    
T  25167462 cagggctggtgtaaatgtaaagggatactttgcatggtctttgttggacaattttgaatgg 25167402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 25670795 - 25670734
Alignment:
Q  17 caaaaacttactatttaaagttcctaaacaatgccttaagggcac-cgttaacatttcccat 77  Q
    |||||||||||||||||||||| |||||||||||| |||||||||  |||||||||||||||    
T  25670795 caaaaacttactatttaaagttactaaacaatgccctaagggcacttgttaacatttcccat 25670734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 698849 - 698791
Alignment:
Q  18 aaaaacttactatttaaagttcctaaacaatgccttaagggcac-cgttaacatttccc 75  Q
    ||||||||||||||||||||| |||||||||||| |||||||||  |||||||||||||    
T  698849 aaaaacttactatttaaagttactaaacaatgccctaagggcacttgttaacatttccc 698791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 3483122 - 3483180
Alignment:
Q  17 caaaaacttactatttaaagttcctaaacaatgccttaagggcac-cgttaacatttcc 74  Q
    |||||||||||||||||||||| |||||||||||| |||||| ||  ||||||||||||    
T  3483122 caaaaacttactatttaaagttactaaacaatgccctaagggtacttgttaacatttcc 3483180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 45925575 - 45925634
Alignment:
Q  17 caaaaacttactatttaaagttcctaaacaatgccttaagggcac-cgttaacatttccc 75  Q
    |||||||||||||||||||||| ||||||||||  |||||  ||| ||||||||||||||    
T  45925575 caaaaacttactatttaaagttactaaacaatgttttaagaacactcgttaacatttccc 45925634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 49003731 - 49003789
Alignment:
Q  17 caaaaacttactatttaaagttcctaaacaatgccttaagggcac-cgttaacatttcc 74  Q
    |||||| |||||||||||||||  ||||||||||| |||||||||  ||||||||||||    
T  49003731 caaaaatttactatttaaagttattaaacaatgccataagggcacttgttaacatttcc 49003789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 26402806 - 26402762
Alignment:
Q  17 caaaaacttactatttaaagttcctaaacaatgccttaagggcac 61  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  26402806 caaaaacttactatttaaagttactaaacaatgccttaagggcac 26402762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 26804043 - 26803982
Alignment:
Q  17 caaaaacttactatttaaagttcctaaacaatgccttaagggcac-cgttaacatttcccat 77  Q
    ||||||||||||||||||||||  ||||||||||| |||||||||  |||||||||||||||    
T  26804043 caaaaacttactatttaaagttattaaacaatgccctaagggcacttgttaacatttcccat 26803982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 5248657 - 5248613
Alignment:
Q  17 caaaaacttactatttaaagttcctaaacaatgccttaagggcac 61  Q
    |||||||||||||||||||||| |||||||||||| |||||||||    
T  5248657 caaaaacttactatttaaagttactaaacaatgccctaagggcac 5248613  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 47405254 - 47405222
Alignment:
Q  17 caaaaacttactatttaaagttcctaaacaatg 49  Q
    |||||||||||||||||||||| ||||||||||    
T  47405254 caaaaacttactatttaaagttactaaacaatg 47405222  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 33650090 - 33650149
Alignment:
Q  17 caaaaacttactatttaaagttcctaaacaatgccttaagggcac-cgttaacatttccc 75  Q
    |||||||||||||||||||||| |||||||||||| |||||||||  |||||||||||||    
T  33650090 caaaaacttactatttaaagttactaaacaatgccctaagggcacttgttaacatttccc 33650149  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 44254151 - 44254095
Alignment:
Q  17 caaaaacttactatttaaagttcctaaacaatgccttaagggcac-cgttaacatttc 73  Q
    |||||||||||||||||||||| ||||| |||| |||||||||||  |||||||||||    
T  44254151 caaaaacttactatttaaagttactaaa-aatgtcttaagggcacttgttaacatttc 44254095  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 591248 - 591180
Alignment:
Q  17 caaaaacttactatttaaagttcctaaacaatgccttaagggcac-cgttaacatttcccattaaatta 84  Q
    |||||||||||||||||||||| |||||||||||| |||| ||||  ||||||||||||| || |||||    
T  591248 caaaaacttactatttaaagttactaaacaatgccctaagagcacttgttaacatttcccttttaatta 591180  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 23129424 - 23129467
Alignment:
Q  17 caaaaacttactatttaaagttcctaaacaatgccttaagggca 60  Q
    |||||||||||||||||||||| |||||||||||| ||||||||    
T  23129424 caaaaacttactatttaaagttactaaacaatgccctaagggca 23129467  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 27146954 - 27146997
Alignment:
Q  17 caaaaacttactatttaaagttcctaaacaatgccttaagggca 60  Q
    |||||||||||||||||||||| |||||||||||| ||||||||    
T  27146954 caaaaacttactatttaaagttactaaacaatgccctaagggca 27146997  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 40872323 - 40872364
Alignment:
Q  18 aaaaacttactatttaaagttcctaaacaatgccttaagggc 59  Q
    ||||||||||||||||||||| |||||||||||| |||||||    
T  40872323 aaaaacttactatttaaagttactaaacaatgccctaagggc 40872364  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 42265518 - 42265562
Alignment:
Q  17 caaaaacttactatttaaagttcctaaacaatgccttaagggcac 61  Q
    |||||||||||||| ||||||| |||||||||| | |||||||||    
T  42265518 caaaaacttactatataaagttactaaacaatgtcctaagggcac 42265562  T

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Target: scaffold0018 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 49015 - 49051
Alignment:
Q  25 tactatttaaagttcctaaacaatgccttaagggcac 61  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  49015 tactatttaaagttactaaacaatgcctaaagggcac 49051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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