View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2181_low_1 (Length: 487)
Name: NF2181_low_1
Description: NF2181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2181_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 17 - 388
Target Start/End: Original strand, 9453310 - 9453682
Alignment:
| Q |
17 |
caattatctaggtgcatatgtgtttttatatgctataagtccaattgaaatttcaagggttgtaacaatttttcacatcatatttggaactaacaactgg |
116 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9453310 |
caattatctaggtgcatatgtgtttctatatgctataagtccaattgaaatttcaagggttgtaacaatttttcacatcatatttggaactaacaactgg |
9453409 |
T |
|
| Q |
117 |
gttgctttgtttttggcacattannnnnnnacacatgatcatgttatgcagtaaatcatagggagtagtaaatagttattccataaatgtgaatttctac |
216 |
Q |
| |
|
|||||||||||||||||||| | ||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
9453410 |
attgctttgtttttggcacataatttttttacacacgatcatgttatgcagtaaatcatagggaatagtaaatagttattccatagatgtgaatttctac |
9453509 |
T |
|
| Q |
217 |
actgatagatttgttcgcttatcaaaatgcaaacacagtttatatattgtatgccaagttcaaaag-ttttggtgccatttctatgtaggtttttcaaaa |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
9453510 |
actgatagatttgttcgcttatcaaaatgcaaacacagtttatatgttgtataccaagttcaaaagtttttggtgccatttttatgtaggtttttcaaaa |
9453609 |
T |
|
| Q |
316 |
caggataccatatatgatttatttttcgttgcctatgtaatcatttttaaaatagtaattcattacctcaatc |
388 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
9453610 |
caggataccatatatgatttatttttcgttgcttatgtaatcatttttaaaatagtaattcattacctcaatc |
9453682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 37684634 - 37684550
Alignment:
| Q |
17 |
caattatctaggtgcatatgtgtttttatatgctataagtccaattgaaatttcaagggttgtaacaatttttcacatcatattt |
101 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
37684634 |
caattatctaggtgcatatgtgtttctatatgctataagtccaattgaaatttcaagggttgtaacaatttttcatatcatattt |
37684550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 17 - 366
Target Start/End: Complemental strand, 38944495 - 38944146
Alignment:
| Q |
17 |
caattatctaggtgcatatgtgtttttatatgctataagtccaattgaaatttcaagggttgtaacaatttttcacatcatatttggaactaacaactgg |
116 |
Q |
| |
|
||||||||||||||||||||||||| | ||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38944495 |
caattatctaggtgcatatgtgtttctttatactataagtccaattggaatttctagggttgtaacaatttttcacatcatatttggaactaacagctgg |
38944396 |
T |
|
| Q |
117 |
gttgctttgtttttggcacattannnnnnnacacatgatcatgttatgcagtaaatcatagggagtagtaaatagttattccataaatgtgaatttctac |
216 |
Q |
| |
|
|||| |||||||||||||||| | ||||| ||||||| ||||||||||||||||||||||||||| |||||||| ||| |||||||||||||| |
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|
| T |
38944395 |
gttgttttgtttttggcacataaattttgtacacaagatcatgctatgcagtaaatcatagggagtagtaagtagttatttcatggatgtgaatttctac |
38944296 |
T |
|
| Q |
217 |
actgatagatttgttcgcttatcaaaatgcaaacacagtttatatattgtatgccaagttcaaaagttttggtgccatttctatgtaggtttttcaaaac |
316 |
Q |
| |
|
|| |||||||||||||||| |||||||||| |||||||||||||| |||||| ||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
38944295 |
acggatagatttgttcgctaatcaaaatgcgaacacagtttatatgcagtatgctaagtttgaaaattttggtgccatttctatgtaggtttttcaaaac |
38944196 |
T |
|
| Q |
317 |
aggataccatatatgatttatttttcgttgcctatgtaatcatttttaaa |
366 |
Q |
| |
|
| ||||||||||||||||||||||| | |||||||||||||||||||| |
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|
| T |
38944195 |
atgataccatatatgatttattttttctcacctatgtaatcatttttaaa |
38944146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 189 - 315
Target Start/End: Original strand, 28127045 - 28127171
Alignment:
| Q |
189 |
tagttattccataaatgtgaatttctacactgatagatttgttcgcttatcaaaatgcaaacacagtttatatattgtatgccaagttcaaaagttttgg |
288 |
Q |
| |
|
|||||||||||| |||||| | ||||||| |||||||||||| ||||||||||||| || ||| ||| ||| | || ||| ||||| ||||||| || |
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|
| T |
28127045 |
tagttattccatggatgtgagtatctacacggatagatttgtttgcttatcaaaatgtgaaaacaatttttatgtagtgtgctaagtttgaaagtttagg |
28127144 |
T |
|
| Q |
289 |
tgccatttctatgtaggtttttcaaaa |
315 |
Q |
| |
|
||| ||||||| | || |||||||||| |
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|
| T |
28127145 |
tgcaatttctaggcagatttttcaaaa |
28127171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 177; Significance: 3e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 17 - 366
Target Start/End: Complemental strand, 18328996 - 18328648
Alignment:
| Q |
17 |
caattatctaggtgcatatgtgtttttatatgctataagtccaattgaaatttcaagggttgtaacaatttttcacatcatatttggaactaacaactgg |
116 |
Q |
| |
|
|||||||||| ||||||||||| || |||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
18328996 |
caattatctacgtgcatatgtgcttctatatgttataagtccaattagaatttctagggttgtaacaatttttcacatcatatttggaactaacagatgg |
18328897 |
T |
|
| Q |
117 |
gttgctttgtttttggcacattannnnnnnacacatgatcatgttatgcagtaaatcatagggagtagtaaatagttattccataaatgtgaatttctac |
216 |
Q |
| |
|
|||| || ||||||||||||| | ||||| |||||||| |||| ||||||||||||||||||||| |||||||| ||| |||||||||||||| |
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|
| T |
18328896 |
gttgtttggtttttggcacataatttttgtacacaagatcatgt-atgctgtaaatcatagggagtagtaagtagttatttcatggatgtgaatttctac |
18328798 |
T |
|
| Q |
217 |
actgatagatttgttcgcttatcaaaatgcaaacacagtttatatattgtatgccaagttcaaaagttttggtgccatttctatgtaggtttttcaaaac |
316 |
Q |
| |
|
|| |||||||||||||||| |||||||||| |||||| |||| || |||||||| ||||| ||| |||||||| |||||| |||||||||||||||||| |
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| T |
18328797 |
acggatagatttgttcgctaatcaaaatgcgaacacattttaaatgttgtatgctaagtttgaaaattttggtgtcatttcaatgtaggtttttcaaaac |
18328698 |
T |
|
| Q |
317 |
aggataccatatatgatttatttttcgttgcctatgtaatcatttttaaa |
366 |
Q |
| |
|
| |||| |||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
18328697 |
atgatatcatatatgatttattttttctcacctatgtaatcatttttaaa |
18328648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 176 - 366
Target Start/End: Complemental strand, 21545261 - 21545071
Alignment:
| Q |
176 |
agggagtagtaaatagttattccataaatgtgaatttctacactgatagatttgttcgcttatcaaaatgcaaacacagtttatatattgtatgccaagt |
275 |
Q |
| |
|
|||||||||||| ||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||| ||| | |||||||| | ||||||||||| |
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|
| T |
21545261 |
agggagtagtaagtagttattcaatagatgtgaatttctacacggatagatttgttcgcttatcaaaatgcgaacgcggtttatatttagtatgccaagt |
21545162 |
T |
|
| Q |
276 |
tcaaaagttttggtgccatttctatgtaggtttttcaaaacaggataccatatatgatttatttttcgttgcctatgtaatcatttttaaa |
366 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||| |||||||| |
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|
| T |
21545161 |
tcaaaagttttggtggcatttttatgtaggtttttcaaaacatgataccatatataatttatttttcgtagcctatgtaattgtttttaaa |
21545071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 21545688 - 21545568
Alignment:
| Q |
17 |
caattatctaggtgcatatgtgtttttatatgctataagtccaattgaaatttcaagggttgtaacaatttttcacatcatatttggaactaacaactgg |
116 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||| |||| ||||| |||| |
|
|
| T |
21545688 |
caattatctaggtgcatatgtgtttctatatgctataagtcctattggaatttcaagggttgaaacaatttttcacatcatattcggaattaacagctgg |
21545589 |
T |
|
| Q |
117 |
gttgctttgtttttggcacat |
137 |
Q |
| |
|
||||||| ||||| ||||||| |
|
|
| T |
21545588 |
gttgcttggttttcggcacat |
21545568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 7499129 - 7499213
Alignment:
| Q |
17 |
caattatctaggtgcatatgtgtttttatatgctataagtccaattgaaatttcaagggttgtaacaatttttcacatcatattt |
101 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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|
| T |
7499129 |
caattatctaggtgcatatgtgtttctatatgctataagtccaattggaatttcaagggttgtaacaatttttcatatcatattt |
7499213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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