View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2181_low_11 (Length: 238)
Name: NF2181_low_11
Description: NF2181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2181_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 20 - 227
Target Start/End: Complemental strand, 25664560 - 25664353
Alignment:
| Q |
20 |
atttatatatttaaaacaaacaaaatatgtagcgagttataatgaaaccttttttgcttttacacatgaatggctttagtttcttaaaccactcaaattg |
119 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25664560 |
atttatatatttaaaacaaacaaaatatgtagggagttataatgaaaccttttttgcttttacacatgaatggctttagtttcttaaaccactcaaattg |
25664461 |
T |
|
| Q |
120 |
cacactcaatgaatgatctgtttgtggttctatgattccacgacgagcgaaataaatcttttcaagtgcactagcacctgaaaatgcaaaatttactcct |
219 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
25664460 |
cacactcaatgaatgatctgtttgtggttctatgattccacgacgagcgaaataaatctttttaagtgcactagcacctgaaaatgcaaaatttactcct |
25664361 |
T |
|
| Q |
220 |
ttcttcat |
227 |
Q |
| |
|
|||||||| |
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|
| T |
25664360 |
ttcttcat |
25664353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 20 - 227
Target Start/End: Complemental strand, 25670965 - 25670758
Alignment:
| Q |
20 |
atttatatatttaaaacaaacaaaatatgtagcgagttataatgaaaccttttttgcttttacacatgaatggctttagtttcttaaaccactcaaattg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25670965 |
atttatatatttaaaacaaacaaaatatgtagggagttataatgaaaccttttttgcttttacacatgaatggctttagtttcttaaaccactcaaattg |
25670866 |
T |
|
| Q |
120 |
cacactcaatgaatgatctgtttgtggttctatgattccacgacgagcgaaataaatcttttcaagtgcactagcacctgaaaatgcaaaatttactcct |
219 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
25670865 |
cacactcaatgaatgatctgtttgtggttctatgattccacgacgagcgaaataaatctttttaagtgcactagcacctgaaaatgcaaaatttactcct |
25670766 |
T |
|
| Q |
220 |
ttcttcat |
227 |
Q |
| |
|
|||||||| |
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|
| T |
25670765 |
ttcttcat |
25670758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 20 - 227
Target Start/End: Complemental strand, 25677370 - 25677163
Alignment:
| Q |
20 |
atttatatatttaaaacaaacaaaatatgtagcgagttataatgaaaccttttttgcttttacacatgaatggctttagtttcttaaaccactcaaattg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25677370 |
atttatatatttaaaacaaacaaaatatgtagggagttataatgaaaccttttttgcttttacacatgaatggctttagtttcttaaaccactcaaattg |
25677271 |
T |
|
| Q |
120 |
cacactcaatgaatgatctgtttgtggttctatgattccacgacgagcgaaataaatcttttcaagtgcactagcacctgaaaatgcaaaatttactcct |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
25677270 |
cacactcaatgaatgatctgtttgtggttctatgattccacgacgagcgaaataaatctttttaagtgcactagcacctgaaaatgcaaaatttactcct |
25677171 |
T |
|
| Q |
220 |
ttcttcat |
227 |
Q |
| |
|
|||||||| |
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|
| T |
25677170 |
ttcttcat |
25677163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 20 - 227
Target Start/End: Complemental strand, 25684044 - 25683837
Alignment:
| Q |
20 |
atttatatatttaaaacaaacaaaatatgtagcgagttataatgaaaccttttttgcttttacacatgaatggctttagtttcttaaaccactcaaattg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25684044 |
atttatatatttaaaacaaacaaaatatgtagggagttataatgaaaccttttttgcttttacacatgaatggctttagtttcttaaaccactcaaattg |
25683945 |
T |
|
| Q |
120 |
cacactcaatgaatgatctgtttgtggttctatgattccacgacgagcgaaataaatcttttcaagtgcactagcacctgaaaatgcaaaatttactcct |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
25683944 |
cacactcaatgaatgatctgtttgtggttctatgattccacgacgagcgaaataaatctttttaagtgcactagcacctgaaaatgcaaaatttactcct |
25683845 |
T |
|
| Q |
220 |
ttcttcat |
227 |
Q |
| |
|
|||||||| |
|
|
| T |
25683844 |
ttcttcat |
25683837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 20 - 227
Target Start/End: Complemental strand, 25658155 - 25657948
Alignment:
| Q |
20 |
atttatatatttaaaacaaacaaaatatgtagcgagttataatgaaaccttttttgcttttacacatgaatggctttagtttcttaaaccactcaaattg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
25658155 |
atttatatatttaaaacaaacaaaatatgtagggagttataatgaaaccttttttgcttttacacatgaatgactttagtttcttaaaccactcaaattg |
25658056 |
T |
|
| Q |
120 |
cacactcaatgaatgatctgtttgtggttctatgattccacgacgagcgaaataaatcttttcaagtgcactagcacctgaaaatgcaaaatttactcct |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25658055 |
tacactcaatgaatgatctgtttgtggttctatgattccacgacgagcgaaataaatcttttcaagtgcactagcacctgaaaatgcaaaatttactcct |
25657956 |
T |
|
| Q |
220 |
ttcttcat |
227 |
Q |
| |
|
|||||||| |
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|
| T |
25657955 |
ttcttcat |
25657948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 16162699 - 16162635
Alignment:
| Q |
64 |
aaaccttttttgcttttacacatgaatggctttagtttcttaaaccactcaaattgcacactcaa |
128 |
Q |
| |
|
||||||| |||||||||||||| || || ||| | || |||||||| ||||||||||||||||| |
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|
| T |
16162699 |
aaaccttctttgcttttacacaataagggtttttgatttttaaaccagtcaaattgcacactcaa |
16162635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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