View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2181_low_12 (Length: 228)
Name: NF2181_low_12
Description: NF2181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2181_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 114; Significance: 6e-58; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 48715025 - 48714908
Alignment:
| Q |
17 |
aaaatccagcagctccaatagtagaaatacctttacttttcaaggcttcaattatgggttgtgacacttcaaaacctgtctcctataaatataatacatg |
116 |
Q |
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| T |
48715025 |
aaaatccagcagctccaatagtagaaatacctttacttttcaaggcttcaattatgggttgtgaaacttcaaaacctgtctcctataaatataatacatg |
48714926 |
T |
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| Q |
117 |
caagtaccagaaaattat |
134 |
Q |
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| T |
48714925 |
caagtaccagaaaattat |
48714908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 112
Target Start/End: Complemental strand, 48702597 - 48702507
Alignment:
| Q |
22 |
ccagcagctccaatagtagaaatacctttacttttcaaggcttcaattatgggttgtgacacttcaaaacctgtctcctataaatataata |
112 |
Q |
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| T |
48702597 |
ccagcagctccaatagcagaaacacctttactttttaaggcttcaattattggttgggaagcttcaaaacctttgtcctgtaaatgtaata |
48702507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 48688324 - 48688231
Alignment:
| Q |
17 |
aaaatccagcagctccaatagtagaaatacctttacttttcaaggcttcaattatgggttgtgacacttcaaaacctgtctcctataaatataa |
110 |
Q |
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| T |
48688324 |
aaaatccagcagccccgacagatgaaacacctttactttttatggcttcaattatgggttttgcatcttcaaaacctttgtcctattaatataa |
48688231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 74
Target Start/End: Original strand, 32150407 - 32150450
Alignment:
| Q |
31 |
ccaatagtagaaatacctttacttttcaaggcttcaattatggg |
74 |
Q |
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| T |
32150407 |
ccaatagcagaaacacctttactttttaaggcttcaattatggg |
32150450 |
T |
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