View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2181_low_3 (Length: 454)
Name: NF2181_low_3
Description: NF2181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2181_low_3 |
 | |
|
| [»] chr5 (10 HSPs) |
| |
|
| [»] chr2 (4 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 223 - 454
Target Start/End: Complemental strand, 34241538 - 34241309
Alignment:
| Q |
223 |
ctagatcaaataagaatgagtcgatagattgtcacactcacatcaaaacttattttaaacagaaagtaaaaactaacacacaatagagaaaataaccaga |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
34241538 |
ctagatcaaataagaatgagtcgatagattgtcaaactcacatcaaaacttattttaaacaga--gtaaaaactaacacacaatagagaaaataaccaga |
34241441 |
T |
|
| Q |
323 |
ataataaaactatgacatttgcaccatcttattcatggttggaccattgtttctcctcactcttgttctcctattcactcttctcttaggatgaccacca |
422 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34241440 |
ataataaaactatgacatttgcaccatctgattcatggttggaccattgtttctcctcacttatgttctcctattcactcttctcttaggatgaccacca |
34241341 |
T |
|
| Q |
423 |
aatatcatcacaaaccatctaggctttccaat |
454 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
34241340 |
aatatcatcacaaaccatctaggctttccaat |
34241309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 247 - 454
Target Start/End: Complemental strand, 34233743 - 34233536
Alignment:
| Q |
247 |
tagattgtcacactcacatcaaaacttattttaaacagaaagtaaaaactaacacaca--atagagaaaataaccagaataataaaactatgacatttgc |
344 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34233743 |
tagattgttacactcacaccaaaacttattttaaacaga--gtaaaaactaacacacacaatagagaaaataaccagaataataaaactatgacatttgc |
34233646 |
T |
|
| Q |
345 |
accatcttattcatggttggaccattgtttctcctcactcttgttctcctattcactcttctcttaggatgaccaccaaatatcatcacaaaccatctag |
444 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34233645 |
accatctgattcatggttggaccattgtttctcctcacttatgttctcctattcactcttctcttaggatgaccaccaaatatcatcacaaaccatctag |
34233546 |
T |
|
| Q |
445 |
gctttccaat |
454 |
Q |
| |
|
|||||||||| |
|
|
| T |
34233545 |
gctttccaat |
34233536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 14 - 178
Target Start/End: Complemental strand, 34241747 - 34241583
Alignment:
| Q |
14 |
gatgaagtataataacacagaatcaaaaactctaactccattttcatcctgggaaatccaaaacatgaatgaaatgctcatgctgctgcctgctagtgtt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34241747 |
gatgaagtataataacacagaatcaaaaactctaactccattttcatcctggaaaatccaaaacatgaatgaaatgctcatgctgctgcctgctagtgtt |
34241648 |
T |
|
| Q |
114 |
ggactttctgggcatttcagtttgtgtacttgtaaaactcaattttgtactgattaaattagatg |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34241647 |
ggactttctgggcatttcagtttgtgtacttgtaaaactcaattttgtactgattaaattagatg |
34241583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 248 - 454
Target Start/End: Original strand, 42122614 - 42122827
Alignment:
| Q |
248 |
agattgtcacactcaca-tcaaaacttattttaaacagaaagtaaaaa-ctaacacacaatagagaaaataaccagaataataaaactatgacatttgca |
345 |
Q |
| |
|
||||||||||||||| | |||| | ||||||||||||||||||||||| | ||||||||| ||| ||| |||| | || ||||||||||||||||||||| |
|
|
| T |
42122614 |
agattgtcacactcaaaatcaaga-ttattttaaacagaaagtaaaaaaccaacacacaacagataaagtaactacaacaataaaactatgacatttgca |
42122712 |
T |
|
| Q |
346 |
ccatcttattc------atggttggaccattgtttctcctcactcttgttctcctattcactcttctcttaggatgaccaccaaatatcatcacaaacca |
439 |
Q |
| |
|
|||||| |||| ||||||| ||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||| ||| |
|
|
| T |
42122713 |
ccatctgattctgattcatggttgaaccatgtgccctcctcactcttgttctccttgtcactcttctcttaggcggaccaccaaatatcatgacaagcca |
42122812 |
T |
|
| Q |
440 |
tctaggctttccaat |
454 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
42122813 |
tctaggctttccaat |
42122827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 290 - 454
Target Start/End: Original strand, 42128052 - 42128222
Alignment:
| Q |
290 |
aaaaactaacacacaatagagaaaataaccagaataataaaactatgacatttgcaccatcttattc------atggttggaccattgtttctcctcact |
383 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||| ||||||| ||||| ||||||||| |
|
|
| T |
42128052 |
aaaaactaatacacaatagagaaaataactagaacaataaaactatgacatttgcaccatctgattctgattcatggttgaaccatgtgccctcctcact |
42128151 |
T |
|
| Q |
384 |
cttgttctcctattcactcttctcttaggatgaccaccaaatatcatcacaaaccatctaggctttccaat |
454 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||||||||||| |||| |||||||| |||| |||| |
|
|
| T |
42128152 |
cttgttctccttgtcactcttctcttaggctgaccaccaaatatcataacaagccatctagacttttcaat |
42128222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 268 - 454
Target Start/End: Original strand, 42116871 - 42117076
Alignment:
| Q |
268 |
aaacttattttaaacagaaagtaaaaa-ctaacacacaatagagaaaataaccagaataataaaactatgacatttgcaccatcttattc---------- |
356 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||||||||||||| | || ||||||||||||||||||||||||||| |||| |
|
|
| T |
42116871 |
aaacttattttaagaagaaagtaaaaaactaacacacaatagagaaaataacaacaacaataaaactatgacatttgcaccatctgattctgattctgat |
42116970 |
T |
|
| Q |
357 |
--------atggttggaccattgtttctcctcactcttgttctcctattcactcttctcttaggatgaccaccaaatatcatcacaaaccatctaggctt |
448 |
Q |
| |
|
||||||| ||||| ||| || |||| ||||||||| || ||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
42116971 |
tctgattcatggttgtaccatggttccttctcattcttgttcttcttttcactcttctcttaggctgaccaccaaatatcatcacaatccatctaggctt |
42117070 |
T |
|
| Q |
449 |
tccaat |
454 |
Q |
| |
|
|||||| |
|
|
| T |
42117071 |
tccaat |
42117076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 248 - 451
Target Start/End: Complemental strand, 41714465 - 41714269
Alignment:
| Q |
248 |
agattgtcacactcacatcaaaacttattttaaacagaaagtaaaaactaacacacaatagagaaaataaccagaataataaaactatgacatttgcacc |
347 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| || | |||||||| | ||||| ||| || || ||| |||||||| |||||||||||| |
|
|
| T |
41714465 |
agattgtcacactcacatcaaa-cttattttaaacacaagg----aactaacaaag--tagaggaaaaaatcacaattctaaaactacgacatttgcacc |
41714373 |
T |
|
| Q |
348 |
atcttattcatggttggaccattgtttctcctcactcttgttctcctattcactcttctcttaggatgaccaccaaatatcatcacaaaccatctaggct |
447 |
Q |
| |
|
|| ||||||||||| ||||||| | ||||||| ||||||||||| ||||| |||||||||| ||||||||||||||||| |||| ||||||||||| |
|
|
| T |
41714372 |
attcgattcatggttgaaccattggtcctcctcattcttgttctccctgtcactattctcttaggctgaccaccaaatatcatgacaagccatctaggct |
41714273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 285 - 451
Target Start/End: Complemental strand, 41572929 - 41572765
Alignment:
| Q |
285 |
aaagtaaaaactaacacacaatagagaaaataaccagaataataaaactatgacatttgcaccatcttattcatggttggaccattgtttctcctcactc |
384 |
Q |
| |
|
|||| ||||||||||||| || |||||||||| ||||| ||||||||||| |||| |||||||||| ||||||||||| |||| |||||||||||| |
|
|
| T |
41572929 |
aaaggaaaaactaacacagaa--gagaaaataatcagaacaataaaactatcacatctgcaccatctaattcatggttgagccatgaattctcctcactc |
41572832 |
T |
|
| Q |
385 |
ttgttctcctattcactcttctcttaggatgaccaccaaatatcatcacaaaccatctaggctttcc |
451 |
Q |
| |
|
|| | ||||| | |||||| |||||| ||||| |||| |||||||||| ||||||||||||||| |
|
|
| T |
41572831 |
ttatcctccttgtaactctttgcttaggttgacctccaaccatcatcacaagccatctaggctttcc |
41572765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 307 - 454
Target Start/End: Complemental strand, 41618549 - 41618401
Alignment:
| Q |
307 |
agagaaaataaccagaataataaaa-ctatgacatttgcaccatcttattcatggttggaccattgtttctcctcactcttgttctcctattcactcttc |
405 |
Q |
| |
|
||||||||||| ||||| ||||||| |||| |||| ||||| |||| ||||||||||| |||| |||||||||||||||| ||||| |||||||| |
|
|
| T |
41618549 |
agagaaaataatcagaacaataaaaactatcacatctgcactatctaattcatggttgagccatgagttctcctcactcttgtgctccttgtcactcttt |
41618450 |
T |
|
| Q |
406 |
tcttaggatgaccaccaaatatcatcacaaaccatctaggctttccaat |
454 |
Q |
| |
|
|||||| ||||| |||| |||||||||| |||||||||||||||||| |
|
|
| T |
41618449 |
gcttaggttgacctccaaccatcatcacaagccatctaggctttccaat |
41618401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 178
Target Start/End: Complemental strand, 34234388 - 34234338
Alignment:
| Q |
128 |
tttcagtttgtgtacttgtaaaactcaattttgtactgattaaattagatg |
178 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||| || | |||||||| |
|
|
| T |
34234388 |
tttctgtttgtgtacttgcaaaactcaattttgtactaataagattagatg |
34234338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 4e-42; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 248 - 454
Target Start/End: Complemental strand, 11995353 - 11995147
Alignment:
| Q |
248 |
agattgtcacactcacatcaaaacttattttaaacagaaagtaaaaactaacacacaatagagaaaataaccagaat----aataaaactatgacatttg |
343 |
Q |
| |
|
||||| ||||||||| |||||| ||||||| ||| | || ||||||||||||||||||||||||||||||||| || ||||| |||| |||||||| |
|
|
| T |
11995353 |
agattatcacactcagatcaaa-cttatttaaaatacaaggtaaaaactaacacacaatagagaaaataaccacaaacaacaataagactaagacatttg |
11995255 |
T |
|
| Q |
344 |
caccatcttattcatggttggaccattgtttctcctcactcttgttctcctattcactcttctcttaggatgaccaccaaatatcatcacaaaccatcta |
443 |
Q |
| |
|
||| ||||||||||| ||||| ||| || ||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
11995254 |
at---tctgattcatggttgcaccatggttcctactcactcttgttctccttttcactcttcttttaggctgaccaccaaatatcatcacaagccatcta |
11995158 |
T |
|
| Q |
444 |
ggctttccaat |
454 |
Q |
| |
|
||||||||||| |
|
|
| T |
11995157 |
ggctttccaat |
11995147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 283 - 454
Target Start/End: Original strand, 12247609 - 12247783
Alignment:
| Q |
283 |
agaaagtaaaaactaacacacaatagagaaaataaccagaataataaaactatgacatttgcaccat------cttattcatggttggaccattgtttct |
376 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| || || | ||| |||||| |||||| || ||||||||||| ||||| ||| || |
|
|
| T |
12247609 |
agaaggtaaaaactaacacacaatagagaaaataaccacaacaaga---ctacgacattgccaccatttgattctgattcatggttgcaccatggttcct |
12247705 |
T |
|
| Q |
377 |
cctcactcttgttctcctattcactcttctcttaggatgaccaccaaatatcatcacaaaccatctaggctttccaat |
454 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
12247706 |
actcactcttgttctccttttcactcttcttttaggctgaccaccaaatatcatcacaagccatctaggctttccaat |
12247783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 396 - 454
Target Start/End: Complemental strand, 32682495 - 32682437
Alignment:
| Q |
396 |
ttcactcttctcttaggatgaccaccaaatatcatcacaaaccatctaggctttccaat |
454 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
32682495 |
ttcactcttctcttaggatgaccaccaattatcatcacaagccatctaggctttccaat |
32682437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 280 - 342
Target Start/End: Complemental strand, 32682557 - 32682495
Alignment:
| Q |
280 |
aacagaaagtaaaaactaacacacaatagagaaaataaccagaataataaaactatgacattt |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || || ||||| |||||||||||| |
|
|
| T |
32682557 |
aacagaaagtaaaaactaacacacaatagagaaaataagcacaacaataagactatgacattt |
32682495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 271 - 454
Target Start/End: Original strand, 11117294 - 11117484
Alignment:
| Q |
271 |
cttattttaaacagaaagtaaaaa-ctaacacacaatagagaaaataaccagaataataaaactatgacatttgcaccatcttattc------atggttg |
363 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| ||| |||||| |||| | | ||||||||||||||||||||||||||| |||| ||| ||| |
|
|
| T |
11117294 |
cttattttaaacagaaagtaaaaaaccaacacccaacggagaaagtaactacgacaataaaactatgacatttgcaccatctgattctgattcatgtttg |
11117393 |
T |
|
| Q |
364 |
gaccattgtttctcctcactcttgttctcctattcactcttctcttaggatgaccaccaaatatcatcacaaaccatctaggctttccaat |
454 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
11117394 |
aaccatgtgcgctcctcactcttgttctccttgtcactcttctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaat |
11117484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 383 - 454
Target Start/End: Original strand, 8522379 - 8522450
Alignment:
| Q |
383 |
tcttgttctcctattcactcttctcttaggatgaccaccaaatatcatcacaaaccatctaggctttccaat |
454 |
Q |
| |
|
|||||| || || |||||||| |||||||| ||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
8522379 |
tcttgtccttcttttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaat |
8522450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 353 - 453
Target Start/End: Complemental strand, 25523881 - 25523781
Alignment:
| Q |
353 |
attcatggttggaccattgtttctcctcactcttgttctcctattcactcttctcttaggatgaccaccaaatatcatcacaaaccatctaggctttcca |
452 |
Q |
| |
|
|||||||| || ||||| || ||||||| |||||| || | ||||| |||||||||| ||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
25523881 |
attcatggctgtaccatgattcctcctcattcttgtcctttttttcacctttctcttaggctgaccgccaaatatcatcacaagccatctaggctttcca |
25523782 |
T |
|
| Q |
453 |
a |
453 |
Q |
| |
|
| |
|
|
| T |
25523781 |
a |
25523781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 308
Target Start/End: Original strand, 30021068 - 30021105
Alignment:
| Q |
271 |
cttattttaaacagaaagtaaaaactaacacacaatag |
308 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
30021068 |
cttattttaaatagaaggtaaaaactaacacacaatag |
30021105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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