View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2181_low_4 (Length: 446)
Name: NF2181_low_4
Description: NF2181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2181_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 18 - 437
Target Start/End: Complemental strand, 29603920 - 29603498
Alignment:
| Q |
18 |
aagaacgtgacttcaaatctcacatttaatgttagaacttccttgttgtgcaatttgtaaatgttctatgaacattaaggtctacattgactctggttaa |
117 |
Q |
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| T |
29603920 |
aagaacgtgacttcaaatctcacattcaaagttagaacttcgttgttgtgtaatttgtaaatgttctgtgaacattaagatctacattgactctggttaa |
29603821 |
T |
|
| Q |
118 |
ccactggaccctattcaataaaactttgtattagaaagaaagnnnnnnnnnn-catgttggagagtggagaaagtttttctaccaagagaaaccaaagat |
216 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29603820 |
ccaccggaccctattcaataaaactttgtattagaaagaaagaaagaaaaaaacatgttggagagtggagaaagtttttctaccaagagaaaccaaagat |
29603721 |
T |
|
| Q |
217 |
aattcatggatctaaaacttgggtggaaaatgtctctggccctatattctctatttcaatgcattgttccttaatcgtcaatcatgtggataaagcctgt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29603720 |
aattcatggatctaaaacttgggtggaaaatgtctctggctctatattctctatttcaatgcattgttccttaatcgtcaatcatgtggataaagcctgt |
29603621 |
T |
|
| Q |
317 |
tcaagcaacacaaacctcttaatgtcgcaaattagtctc--aatccctcaagccgtactaggaattgttcttgttcacttcatatgaatggaatcaatta |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29603620 |
tcaagcaacacaaacctcttaatgtcgcaaattagtctcaaaatccctcaagccgtactaggaattgttcttgttcacttcatatgaatggaatcaatta |
29603521 |
T |
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| Q |
415 |
caatttatggggtcgacctatga |
437 |
Q |
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||||||||||||||||||||||| |
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| T |
29603520 |
caatttatggggtcgacctatga |
29603498 |
T |
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