View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2181_low_7 (Length: 297)
Name: NF2181_low_7
Description: NF2181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2181_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 14 - 280
Target Start/End: Original strand, 27985280 - 27985546
Alignment:
| Q |
14 |
agacaactagtataagaaaacttgacattaaaatttacaattgttatccactaaatgaccaattgaaataagctggaatcaagtgcatggatacaaacgc |
113 |
Q |
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| T |
27985280 |
agacaactagcataagaaaacttgacattacaatttacaattgttatccactaaatgaccgattgaaataagctataatcaagtgcatggatacaaatgc |
27985379 |
T |
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| Q |
114 |
atttcgaaactcaaagtttatgacaccaacattagtgatacaaagagtactaccgtcaacaatttgaattttctgagtaccatgataaagggtgtatact |
213 |
Q |
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| T |
27985380 |
atttcgaaactcaaagtttatgacaccaacattagtgatacaaagagtattaccgtcaacaatttgaattttctgagtaccatgataaagggtgtatact |
27985479 |
T |
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| Q |
214 |
ttgcaagtatttagaggaacctttatttttaaaggcaccgatgaacaaaatatcaagtgtactagat |
280 |
Q |
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| T |
27985480 |
ttgcaagtatttagaggaacctttatttttaaaggcaccgatgaacaaaatatcaagtgtactagat |
27985546 |
T |
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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 201
Target Start/End: Original strand, 17605715 - 17605798
Alignment:
| Q |
118 |
cgaaactcaaagtttatgacaccaacattagtgatacaaagagtactaccgtcaacaatttgaattttctgagtaccatgataa |
201 |
Q |
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| T |
17605715 |
cgaaaatcagagtttatgtcaccaacatcagtgatagaaagagtattaccatcggcaatttgaattttcttattaccatcataa |
17605798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 4866055 - 4866123
Alignment:
| Q |
128 |
agtttatgacaccaacattagtgatacaaagagtactaccgtcaacaatttgaattttctgagtaccat |
196 |
Q |
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| T |
4866055 |
agtttatgtcaccaagagtagtgatagaaagggtattaccatcagcaatttgaattttctgattaccat |
4866123 |
T |
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