View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2182_high_1 (Length: 544)
Name: NF2182_high_1
Description: NF2182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2182_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 25 - 532
Target Start/End: Complemental strand, 51579938 - 51579432
Alignment:
| Q |
25 |
agaagaaactagttctaattaagttcctgctttactttatgctaagaagagtatggccattcaaagaatatttgcattgcataattgttcctacaagtta |
124 |
Q |
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| T |
51579938 |
agaagaaactagttctaattaagttcctgctttactttatgctaagaagagtatggccattcaaagaatatttgcattgcataattgttcctacaagtta |
51579839 |
T |
|
| Q |
125 |
cattatagtgccatttctgttcgttggatttaagtattggtaaacggtaaaccaatgaggctttatatcttttagggtaaagtaaagactaagtaatttc |
224 |
Q |
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| T |
51579838 |
cattatagtgccatttctgttcgttggatttaagtattggtaaacggtaaaccaatgaggctttatatcttttagggtaaagtaaagactaagtaatttc |
51579739 |
T |
|
| Q |
225 |
attatgtgtgatgataaattctttacatgctaccatttggccttcaaacagttcatatttgctttaatttgcaaactggttctgcttctaatctaaccat |
324 |
Q |
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| T |
51579738 |
attatgtgtgatgataaattctttacatgctaccatttggccttcaaacagttcatatttgctttaatttgcaaactggttctgcttctaatctaaccat |
51579639 |
T |
|
| Q |
325 |
ctgtgttggacaacttggaaagaagtttctaaaatattacaatcatactctcggggaggcaaatcacggagctaacacgggtgcaaaggagggttgaaaa |
424 |
Q |
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| T |
51579638 |
ctgtgttggacaacttggaaagaagtttgtaaaatattacaatcatactctcggggaggcaaatcacggagctaacac-ggtgcaaaggagggttgaaaa |
51579540 |
T |
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| Q |
425 |
agtcgatgcacatgtatattttttacttatgttcctactttttgctatttattagtgtttgttgttgataactttgaattgctggttgtaatttctttat |
524 |
Q |
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| T |
51579539 |
agtcgatgcacatgtatattttttacttatgttcctactttttgctatttattagtgtttgttgttgataactttgaattgctggttgtaatttctttat |
51579440 |
T |
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| Q |
525 |
tttatttt |
532 |
Q |
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| T |
51579439 |
tttatttt |
51579432 |
T |
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