View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2182_high_11 (Length: 248)

Name: NF2182_high_11
Description: NF2182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2182_high_11
NF2182_high_11
[»] chr8 (24 HSPs)
chr8 (16-105)||(18404843-18404932)
chr8 (16-106)||(39584932-39585027)
chr8 (103-158)||(15870767-15870822)
chr8 (16-60)||(6837867-6837911)
chr8 (16-60)||(37698143-37698187)
chr8 (1-60)||(38993265-38993323)
chr8 (1-60)||(44599289-44599347)
chr8 (16-60)||(26741362-26741406)
chr8 (16-60)||(26909882-26909926)
chr8 (16-102)||(27126666-27126759)
chr8 (16-57)||(2612518-2612559)
chr8 (103-152)||(38993406-38993455)
chr8 (16-60)||(7990235-7990279)
chr8 (16-56)||(35917858-35917898)
chr8 (103-151)||(44599426-44599474)
chr8 (104-151)||(27126581-27126628)
chr8 (61-106)||(7990296-7990341)
chr8 (50-106)||(2612572-2612628)
chr8 (107-151)||(2612670-2612714)
chr8 (16-60)||(15870915-15870959)
chr8 (16-103)||(35596345-35596431)
chr8 (16-46)||(10730043-10730073)
chr8 (108-158)||(13098738-13098788)
chr8 (104-141)||(6837729-6837766)
[»] chr7 (17 HSPs)
chr7 (1-106)||(13932636-13932742)
chr7 (16-60)||(10361190-10361234)
chr7 (22-102)||(11910827-11910902)
chr7 (103-151)||(29646580-29646628)
chr7 (16-59)||(19347856-19347899)
chr7 (17-60)||(32455548-32455591)
chr7 (104-164)||(8242051-8242111)
chr7 (16-59)||(45261438-45261481)
chr7 (16-57)||(8242213-8242254)
chr7 (16-60)||(25942550-25942594)
chr7 (54-106)||(29646666-29646718)
chr7 (105-151)||(13932782-13932828)
chr7 (59-106)||(45261372-45261419)
chr7 (16-46)||(29646743-29646773)
chr7 (50-106)||(8242144-8242200)
chr7 (50-106)||(10361124-10361180)
chr7 (58-106)||(19347918-19347966)
[»] chr1 (36 HSPs)
chr1 (163-233)||(37516228-37516298)
chr1 (16-105)||(7025887-7025976)
chr1 (16-106)||(48814557-48814642)
chr1 (16-85)||(13982509-13982578)
chr1 (103-151)||(5154242-5154290)
chr1 (16-60)||(8223133-8223177)
chr1 (16-60)||(44745678-44745722)
chr1 (17-60)||(34968250-34968293)
chr1 (16-102)||(50579255-50579336)
chr1 (16-60)||(26519851-26519895)
chr1 (103-151)||(26520004-26520052)
chr1 (16-60)||(29579694-29579738)
chr1 (103-151)||(35825370-35825418)
chr1 (16-60)||(35825497-35825541)
chr1 (16-60)||(36368740-36368784)
chr1 (103-151)||(50579378-50579426)
chr1 (103-154)||(8223280-8223331)
chr1 (16-60)||(5154094-5154138)
chr1 (16-60)||(21070037-21070081)
chr1 (103-151)||(29579537-29579585)
chr1 (16-55)||(31198758-31198797)
chr1 (104-154)||(38614452-38614502)
chr1 (16-56)||(1356875-1356915)
chr1 (16-56)||(4447366-4447406)
chr1 (54-106)||(5154157-5154209)
chr1 (54-106)||(26519914-26519966)
chr1 (104-151)||(4447226-4447273)
chr1 (15-46)||(9864865-9864896)
chr1 (16-47)||(10923869-10923900)
chr1 (104-151)||(36368583-36368630)
chr1 (62-108)||(8223204-8223250)
chr1 (16-46)||(26003555-26003585)
chr1 (49-107)||(36368673-36368731)
chr1 (57-106)||(29579623-29579672)
chr1 (108-152)||(45071945-45071989)
chr1 (16-56)||(45072091-45072131)
[»] chr4 (38 HSPs)
chr4 (16-106)||(11509195-11509285)
chr4 (16-106)||(7878542-7878627)
chr4 (1-60)||(28185200-28185258)
chr4 (104-151)||(51549438-51549485)
chr4 (1-60)||(28972912-28972970)
chr4 (105-151)||(34487425-34487471)
chr4 (106-151)||(49269340-49269385)
chr4 (16-60)||(13391236-13391280)
chr4 (16-60)||(34487572-34487616)
chr4 (16-60)||(48080658-48080702)
chr4 (16-60)||(49269189-49269233)
chr4 (16-59)||(1763819-1763862)
chr4 (103-151)||(1763964-1764012)
chr4 (16-60)||(6377191-6377235)
chr4 (16-60)||(7069449-7069493)
chr4 (103-151)||(13391089-13391137)
chr4 (16-60)||(18732704-18732748)
chr4 (16-60)||(51549585-51549629)
chr4 (104-151)||(48080536-48080583)
chr4 (56-106)||(1763882-1763932)
chr4 (57-106)||(6377125-6377174)
chr4 (57-106)||(55762299-55762348)
chr4 (57-106)||(55826107-55826156)
chr4 (103-151)||(7069298-7069346)
chr4 (103-151)||(7878660-7878708)
chr4 (50-106)||(13391170-13391226)
chr4 (54-106)||(31845960-31846012)
chr4 (16-60)||(31846031-31846074)
chr4 (16-56)||(36505478-36505518)
chr4 (103-151)||(41235568-41235616)
chr4 (16-56)||(42384147-42384187)
chr4 (50-106)||(49269243-49269299)
chr4 (16-60)||(55762235-55762278)
chr4 (16-60)||(55826042-55826086)
chr4 (60-106)||(7069383-7069429)
chr4 (31-60)||(41235721-41235750)
chr4 (54-106)||(18732629-18732681)
chr4 (50-106)||(28185134-28185190)
[»] chr6 (15 HSPs)
chr6 (15-106)||(2978633-2978724)
chr6 (16-60)||(6862151-6862195)
chr6 (16-60)||(34677070-34677114)
chr6 (16-106)||(34760403-34760498)
chr6 (16-106)||(15707316-15707401)
chr6 (103-152)||(34760316-34760365)
chr6 (16-60)||(10321361-10321405)
chr6 (103-151)||(15707230-15707278)
chr6 (16-56)||(11546046-11546086)
chr6 (109-151)||(6862043-6862085)
chr6 (105-151)||(21038808-21038854)
chr6 (16-65)||(21038755-21038804)
chr6 (16-60)||(32011651-32011695)
chr6 (103-166)||(10321514-10321577)
chr6 (50-102)||(30044091-30044143)
[»] chr3 (41 HSPs)
chr3 (1-60)||(29170421-29170480)
chr3 (16-105)||(9145255-9145342)
chr3 (16-60)||(25630914-25630958)
chr3 (16-60)||(45317030-45317074)
chr3 (1-60)||(16341485-16341543)
chr3 (17-60)||(33775026-33775069)
chr3 (16-106)||(50463152-50463249)
chr3 (17-103)||(40503805-40503886)
chr3 (104-153)||(26135661-26135710)
chr3 (16-60)||(13159257-13159301)
chr3 (16-56)||(18971895-18971935)
chr3 (16-60)||(24426053-24426097)
chr3 (103-151)||(25631087-25631135)
chr3 (104-164)||(28991058-28991118)
chr3 (16-60)||(28991228-28991272)
chr3 (16-60)||(29323244-29323288)
chr3 (16-60)||(44906186-44906230)
chr3 (16-60)||(46558896-46558940)
chr3 (103-151)||(50463287-50463335)
chr3 (104-154)||(18971736-18971786)
chr3 (16-60)||(28986081-28986125)
chr3 (16-60)||(53302623-53302667)
chr3 (16-60)||(53303790-53303834)
chr3 (16-56)||(55140153-55140193)
chr3 (17-59)||(26135507-26135550)
chr3 (49-106)||(55140084-55140140)
chr3 (54-106)||(28991157-28991209)
chr3 (54-106)||(29323307-29323359)
chr3 (103-151)||(31373052-31373099)
chr3 (16-60)||(38733977-38734020)
chr3 (103-151)||(44906333-44906381)
chr3 (16-60)||(45200126-45200170)
chr3 (103-163)||(45317182-45317242)
chr3 (54-101)||(44906249-44906296)
chr3 (54-104)||(31372967-31373017)
chr3 (16-60)||(31372903-31372948)
chr3 (57-106)||(42591087-42591136)
chr3 (54-106)||(13159320-13159372)
chr3 (115-151)||(13159409-13159445)
chr3 (50-106)||(25630993-25631049)
chr3 (54-106)||(26135570-26135622)
[»] chr2 (18 HSPs)
chr2 (16-106)||(9651012-9651107)
chr2 (16-102)||(44088359-44088445)
chr2 (1-60)||(26827365-26827423)
chr2 (17-106)||(25325138-25325232)
chr2 (16-60)||(12569410-12569454)
chr2 (16-60)||(42808093-42808137)
chr2 (16-57)||(4185335-4185376)
chr2 (16-60)||(3587310-3587354)
chr2 (103-151)||(4158653-4158701)
chr2 (103-154)||(11706628-11706679)
chr2 (16-57)||(38288727-38288768)
chr2 (16-56)||(3237460-3237500)
chr2 (16-60)||(4158777-4158821)
chr2 (105-151)||(33907216-33907261)
chr2 (1-46)||(33907096-33907140)
chr2 (103-154)||(42807938-42807989)
chr2 (16-46)||(40022221-40022251)
chr2 (103-151)||(26827515-26827563)
[»] scaffold0137 (2 HSPs)
scaffold0137 (17-109)||(24310-24409)
scaffold0137 (103-151)||(24237-24285)
[»] chr5 (10 HSPs)
chr5 (16-60)||(18405835-18405879)
chr5 (1-56)||(35540276-35540330)
chr5 (16-106)||(28210773-28210858)
chr5 (104-151)||(18405679-18405726)
chr5 (1-60)||(34374744-34374802)
chr5 (16-60)||(10371255-10371299)
chr5 (103-151)||(10371390-10371438)
chr5 (103-151)||(34374605-34374653)
chr5 (108-149)||(18720287-18720328)
chr5 (16-56)||(23219803-23219843)
[»] scaffold0110 (1 HSPs)
scaffold0110 (1-60)||(49601-49659)
[»] scaffold0242 (2 HSPs)
scaffold0242 (1-53)||(3811-3862)
scaffold0242 (103-151)||(3681-3729)
[»] scaffold0002 (3 HSPs)
scaffold0002 (16-60)||(147687-147731)
scaffold0002 (115-151)||(147543-147579)
scaffold0002 (54-106)||(147616-147668)
[»] scaffold0024 (1 HSPs)
scaffold0024 (58-106)||(58239-58287)


Alignment Details
Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 18404932 - 18404843
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggcccggcccaacttatatatggcctaaataggcttgggccgaaaaagcc 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||| |||||||||||||||||||    
T  18404932 ttttttaacaaaaataaaatgaaatatgggctaatgggccggcccggcccaacttttgtatggcccaaatcggcttgggccgaaaaagcc 18404843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 39585027 - 39584932
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatggg-----ccggcccggcccaacttatatatggcctaaataggcttgggccgaaaaagccc 106  Q
    |||||||||||||||||||| |||||||||||||||||     ||||||||||||||||| | ||||||| |||| ||||||||||||||||||||    
T  39585027 ttttttaacaaaaataaaattaaatatgggctaatgggccagtccggcccggcccaacttttgtatggcccaaatgggcttgggccgaaaaagccc 39584932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 103 - 158
Target Start/End: Complemental strand, 15870822 - 15870767
Alignment:
Q  103 gcccaaaaatatgggccaatggaccggcccatgagcccgacccattttttacggct 158  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  15870822 gcccaaaaatatgggccaatagaccggcctatgagcccgacccattttttacggct 15870767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 6837911 - 6837867
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  6837911 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 6837867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 37698187 - 37698143
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  37698187 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 37698143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 38993265 - 38993323
Alignment:
Q  1 taaattagttgataattttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||    
T  38993265 taaattagttgataatgttttaa-aaaaataaaatgaaatatgggctaacgggccggccc 38993323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 44599289 - 44599347
Alignment:
Q  1 taaattagttgataattttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||    
T  44599289 taaattagttgataatgttttaa-aaaaataaaatgaaatatgggctaacgggccggccc 44599347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 26741406 - 26741362
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  26741406 ttttttaacaaaaataaaatgaaatatgggataatgggccggccc 26741362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 26909882 - 26909926
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  26909882 ttttttaacaaaaataaaatgaaatatgggttaatgggccggccc 26909926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 27126759 - 27126666
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccg-------gcccggcccaacttatatatggcctaaataggcttgggccgaaaaa 102  Q
    |||||||||||||||||||| |||||||||| |||||||||       |||||||||||||| | | ||||| |||| ||||||||||||||||    
T  27126759 ttttttaacaaaaataaaataaaatatgggccaatgggccggcccaaagcccggcccaacttttgtctggcccaaatgggcttgggccgaaaaa 27126666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 2612518 - 2612559
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccgg 57  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  2612518 ttttttaacaaaaataaaatgaaatatgggccaatgggccgg 2612559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 38993406 - 38993455
Alignment:
Q  103 gcccaaaaatatgggccaatggaccggcccatgagcccgacccatttttt 152  Q
    ||||||||| ||||||||||||||||| ||||||||||| ||||||||||    
T  38993406 gcccaaaaacatgggccaatggaccggtccatgagcccggcccatttttt 38993455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 7990235 - 7990279
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||    
T  7990235 ttttttaacaaaaataaaaagaaatatgggctaatgggacggccc 7990279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 35917898 - 35917858
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccg 56  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  35917898 ttttttaacaaaaataaaatgaaatatgggctaataggccg 35917858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 44599426 - 44599474
Alignment:
Q  103 gcccaaaaatatgggccaatggaccggcccatgagcccgacccattttt 151  Q
    ||||||||| ||||||||||||||||| ||||||||||| |||||||||    
T  44599426 gcccaaaaacatgggccaatggaccggtccatgagcccggcccattttt 44599474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 151
Target Start/End: Complemental strand, 27126628 - 27126581
Alignment:
Q  104 cccaaaaatatgggccaatggaccggcccatgagcccgacccattttt 151  Q
    |||||||||||| |||||||| |||||||||||||||| |||||||||    
T  27126628 cccaaaaatatgagccaatgggccggcccatgagcccggcccattttt 27126581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 106
Target Start/End: Original strand, 7990296 - 7990341
Alignment:
Q  61 ggcccaacttatatatggcctaaataggcttgggccgaaaaagccc 106  Q
    |||||||||| | ||||||| |||||||||||||||||||||||||    
T  7990296 ggcccaacttttgtatggcccaaataggcttgggccgaaaaagccc 7990341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 2612572 - 2612628
Alignment:
Q  50 tgggccggcccggcccaacttatatatggcctaaataggcttgggccgaaaaagccc 106  Q
    |||||| |||| ||||||||| | ||||||| |||| ||||||||||||||||||||    
T  2612572 tgggccagcccagcccaacttttttatggcccaaatgggcttgggccgaaaaagccc 2612628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 2612670 - 2612714
Alignment:
Q  107 aaaaatatgggccaatggaccggcccatgagcccgacccattttt 151  Q
    |||||||||||||||||| ||||||||||||||||  ||||||||    
T  2612670 aaaaatatgggccaatgggccggcccatgagcccggtccattttt 2612714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 15870959 - 15870915
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    ||||||||||||||||||||| |||||||||||||  ||||||||    
T  15870959 ttttttaacaaaaataaaatggaatatgggctaataagccggccc 15870915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 35596345 - 35596431
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggcc--ggcccggcccaacttatatatggcctaaataggcttgggccgaaaaag 103  Q
    |||||||||||||||||||||||||||||||    || ||   |||||||||||||| | ||||||| || | |||||||||||||||||    
T  35596345 ttttttaacaaaaataaaatgaaatatgggc---cggcccaaagcccggcccaacttttgtatggcccaattgggcttgggccgaaaaag 35596431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 46
Target Start/End: Complemental strand, 10730073 - 10730043
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggc 46  Q
    |||||||||||||||||||||||||||||||    
T  10730073 ttttttaacaaaaataaaatgaaatatgggc 10730043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 158
Target Start/End: Complemental strand, 13098788 - 13098738
Alignment:
Q  108 aaaatatgggccaatggaccggcccatgagcccgacccattttttacggct 158  Q
    ||||||||||| ||| ||||||||||| ||||||  |||||||||||||||    
T  13098788 aaaatatgggctaatagaccggcccattagcccggtccattttttacggct 13098738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 6837766 - 6837729
Alignment:
Q  104 cccaaaaatatgggccaatggaccggcccatgagcccg 141  Q
    ||||||||||||||||||||| || |||||||||||||    
T  6837766 cccaaaaatatgggccaatgggccagcccatgagcccg 6837729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 13932636 - 13932742
Alignment:
Q  1 taaattagttgataatttt-ttaacaaaaataaaatgaaatatgggctaatgggccggcccggcccaacttatatatggcctaaataggcttgggccgaa 99  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||| ||||||| | ||||||| |||| |||||||||||||    
T  13932636 taaattagttgataatttttttaacaaaaataaaatgaaatatgggccaatgggctggcccggaccaacttttgtatggcccaaatgggcttgggccgaa 13932735  T
Q  100 aaagccc 106  Q
    |||||||    
T  13932736 aaagccc 13932742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 10361234 - 10361190
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  10361234 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 10361190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 11910902 - 11910827
Alignment:
Q  22 aacaaaaataaaatgaaatatgggctaatgggccggcccggcccaacttatatatggcctaaataggcttgggccgaaaaa 102  Q
    |||||||||||||||||||||||||||||||||||     ||||||||| | ||||||| |||| ||||||||||||||||    
T  11910902 aacaaaaataaaatgaaatatgggctaatgggccg-----gcccaacttttgtatggcccaaatgggcttgggccgaaaaa 11910827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 29646628 - 29646580
Alignment:
Q  103 gcccaaaaatatgggccaatggaccggcccatgagcccgacccattttt 151  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  29646628 gcccaaaaatatgggccaatggaccggcccatgagcccggcccattttt 29646580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 19347856 - 19347899
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggcc 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  19347856 ttttttaacaaaaataaaatgaaatatgggctaatgggccggcc 19347899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 32455591 - 32455548
Alignment:
Q  17 tttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  32455591 tttttaacaaaaataaaatgaaatatgggctaatgggccggccc 32455548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 8242111 - 8242051
Alignment:
Q  104 cccaaaaatatgggccaatggaccggcccatgagcccgacccattttttacggctttaata 164  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||| || ||| |||||    
T  8242111 cccaaaactatgggccaatgggccggcccatgagcccgacccatttttgacagctctaata 8242051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 45261481 - 45261438
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggcc 59  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  45261481 ttttttaacaaaaataaaatgaaatatgggccaatgggccggcc 45261438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 8242254 - 8242213
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccgg 57  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  8242254 ttttttaacaaaaataaaatgaaatatgggccaatgggccgg 8242213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 25942594 - 25942550
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||    
T  25942594 ttttttaactaaaataaaataaaatatgggctaatgggccggccc 25942550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 29646718 - 29646666
Alignment:
Q  54 ccggcccggcccaacttatatatggcctaaataggcttgggccgaaaaagccc 106  Q
    ||||||||||||||||| | ||||||| |||| ||||||||||||||||||||    
T  29646718 ccggcccggcccaacttttttatggcccaaatgggcttgggccgaaaaagccc 29646666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 13932782 - 13932828
Alignment:
Q  105 ccaaaaatatgggccaatggaccggcccatgagcccgacccattttt 151  Q
    |||||||||| ||||||||| |||||||||||| |||||||||||||    
T  13932782 ccaaaaatattggccaatgggccggcccatgagtccgacccattttt 13932828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 106
Target Start/End: Complemental strand, 45261419 - 45261372
Alignment:
Q  59 ccggcccaacttatatatggcctaaataggcttgggccgaaaaagccc 106  Q
    |||||||||||| | ||||||| ||||||||||||||| |||||||||    
T  45261419 ccggcccaacttttgtatggcccaaataggcttgggccaaaaaagccc 45261372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 46
Target Start/End: Complemental strand, 29646773 - 29646743
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggc 46  Q
    |||||||||||||||||||||||||||||||    
T  29646773 ttttttaacaaaaataaaatgaaatatgggc 29646743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 8242200 - 8242144
Alignment:
Q  50 tgggccggcccggcccaacttatatatggcctaaataggcttgggccgaaaaagccc 106  Q
    |||||| |||||||||||||| |  |||||| |||| |||||||||| |||||||||    
T  8242200 tgggccagcccggcccaacttttgaatggcccaaatgggcttgggccaaaaaagccc 8242144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 10361180 - 10361124
Alignment:
Q  50 tgggccggcccggcccaacttatatatggcctaaataggcttgggccgaaaaagccc 106  Q
    |||||| |||||||| ||||| | ||||||| |||| |||||||||||| |||||||    
T  10361180 tgggccagcccggcctaacttttgtatggcccaaatgggcttgggccgacaaagccc 10361124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 19347918 - 19347966
Alignment:
Q  58 cccggcccaacttatatatggcctaaataggcttgggccgaaaaagccc 106  Q
    ||||||||||||| | ||||||| |||| ||||| ||||||||||||||    
T  19347918 cccggcccaacttttgtatggcccaaatgggcttaggccgaaaaagccc 19347966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 37516298 - 37516228
Alignment:
Q  163 tactcactcacctcatgtacactactctcttattcacatatcaataaacataattaaatttcagtactctc 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  37516298 tactcactcacctcatgtacactactctcttattcacatatcaataaacataattcaatttcagtactctc 37516228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 7025976 - 7025887
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggcccggcccaacttatatatggcctaaataggcttgggccgaaaaagcc 105  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| | ||||| | |||| | |||||||||||||||||    
T  7025976 ttttttaacaaaaattaaatgaaatatgggctaatgggccggcccggtccaacttttgtatgggccaaatggacttgggccgaaaaagcc 7025887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 48814557 - 48814642
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggcccggcccaacttatatatggcctaaataggcttgggccgaaaaagccc 106  Q
    ||||||||||||||||||||||||||||||| ||||||     |||||||||||| | ||||||| |||| ||||||||||||||||||||    
T  48814557 ttttttaacaaaaataaaatgaaatatgggccaatggg-----ccggcccaacttttgtatggcccaaatgggcttgggccgaaaaagccc 48814642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 13982509 - 13982578
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggcccggcccaacttatatatggcctaaat 85  Q
    |||||||||||||||||||||||||||||||||||||||| ||||  |||||||| | ||||||| ||||    
T  13982509 ttttttaacaaaaataaaatgaaatatgggctaatgggccagcccaacccaacttttgtatggcccaaat 13982578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 5154242 - 5154290
Alignment:
Q  103 gcccaaaaatatgggccaatggaccggcccatgagcccgacccattttt 151  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5154242 gcccaaaaatatgggccaatgggccggcccatgagcccgacccattttt 5154290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 8223133 - 8223177
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  8223133 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 8223177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 44745678 - 44745722
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  44745678 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 44745722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 34968250 - 34968293
Alignment:
Q  17 tttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  34968250 tttttaacaaaaataaaatgaaatatgggctaatgggccggccc 34968293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 50579255 - 50579336
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggcccggcccaacttatatatggcctaaataggcttgggccgaaaaa 102  Q
    ||||||||||||||||||| ||||||||||||||||||     |||||||||||| | ||||||| |||| |||||||||| |||||    
T  50579255 ttttttaacaaaaataaaacgaaatatgggctaatggg-----ccggcccaacttttgtatggcccaaatgggcttgggccaaaaaa 50579336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 26519851 - 26519895
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  26519851 ttttttaacaaaaataaaatgaaatatgggccaatgggccggccc 26519895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 26520004 - 26520052
Alignment:
Q  103 gcccaaaaatatgggccaatggaccggcccatgagcccgacccattttt 151  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||    
T  26520004 gcccaaaaatatgggccaatgggccggcccatgagcccggcccattttt 26520052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 29579738 - 29579694
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  29579738 ttttttaacaaaaataaaatgaaatatgggccaatgggccggccc 29579694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 35825418 - 35825370
Alignment:
Q  103 gcccaaaaatatgggccaatggaccggcccatgagcccgacccattttt 151  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||    
T  35825418 gcccaaaaatatgggccaatgggccggcccatgagcccggcccattttt 35825370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 35825541 - 35825497
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  35825541 ttttttaacaaaaataaaatgaaatatgggccaatgggccggccc 35825497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 36368784 - 36368740
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  36368784 ttttttaacaaaaataaaataaaatatgggctaatgggccggccc 36368740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 50579378 - 50579426
Alignment:
Q  103 gcccaaaaatatgggccaatggaccggcccatgagcccgacccattttt 151  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||    
T  50579378 gcccaaaaatatgggccaatgggccggcccatgagcccggcccattttt 50579426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 103 - 154
Target Start/End: Original strand, 8223280 - 8223331
Alignment:
Q  103 gcccaaaaatatgggccaatggaccggcccatgagcccgacccattttttac 154  Q
    |||||||||||||||||||||  |||||||||||||||| ||||||||||||    
T  8223280 gcccaaaaatatgggccaatgtgccggcccatgagcccggcccattttttac 8223331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 5154094 - 5154138
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    ||||||||||||||||||||||||||||||  |||||||||||||    
T  5154094 ttttttaacaaaaataaaatgaaatatgggtcaatgggccggccc 5154138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 21070037 - 21070081
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||    
T  21070037 ttttttaacaaaaataaaattaaatatgggctaatgggccagccc 21070081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 29579585 - 29579537
Alignment:
Q  103 gcccaaaaatatgggccaatggaccggcccatgagcccgacccattttt 151  Q
    |||||||||||||| ||||||| |||||||||||||||| |||||||||    
T  29579585 gcccaaaaatatggcccaatgggccggcccatgagcccggcccattttt 29579537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 31198758 - 31198797
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggcc 55  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  31198758 ttttttaacaaaaataaaatgaaatatgggccaatgggcc 31198797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 38614452 - 38614502
Alignment:
Q  104 cccaaaaatatgggccaatggaccggcccatgagcccgacccattttttac 154  Q
    ||||||||||||||||||| ||||||||||||||||   ||||||||||||    
T  38614452 cccaaaaatatgggccaatagaccggcccatgagccgatcccattttttac 38614502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 1356915 - 1356875
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccg 56  Q
    ||||||||||||||| |||||||||| ||||||||||||||    
T  1356915 ttttttaacaaaaatcaaatgaaatacgggctaatgggccg 1356875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 4447406 - 4447366
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccg 56  Q
    |||||||||||||||||||||||||||| || |||||||||    
T  4447406 ttttttaacaaaaataaaatgaaatatgagccaatgggccg 4447366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 5154157 - 5154209
Alignment:
Q  54 ccggcccggcccaacttatatatggcctaaataggcttgggccgaaaaagccc 106  Q
    ||||||||||||||||| | | ||||| |||| ||||||||||||||||||||    
T  5154157 ccggcccggcccaacttttgtctggcccaaatgggcttgggccgaaaaagccc 5154209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 26519914 - 26519966
Alignment:
Q  54 ccggcccggcccaacttatatatggcctaaataggcttgggccgaaaaagccc 106  Q
    ||||||||||||||||| | | ||||| |||| ||||||||||||||||||||    
T  26519914 ccggcccggcccaacttttgtctggcccaaatgggcttgggccgaaaaagccc 26519966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 151
Target Start/End: Complemental strand, 4447273 - 4447226
Alignment:
Q  104 cccaaaaatatgggccaatggaccggcccatgagcccgacccattttt 151  Q
    ||||||||||||||||||||  |||||||||||| ||| |||||||||    
T  4447273 cccaaaaatatgggccaatgagccggcccatgagtccggcccattttt 4447226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 46
Target Start/End: Complemental strand, 9864896 - 9864865
Alignment:
Q  15 attttttaacaaaaataaaatgaaatatgggc 46  Q
    ||||||||||||||||||||||||||||||||    
T  9864896 attttttaacaaaaataaaatgaaatatgggc 9864865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 47
Target Start/End: Complemental strand, 10923900 - 10923869
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggct 47  Q
    ||||||||||||||||||||||||||||||||    
T  10923900 ttttttaacaaaaataaaatgaaatatgggct 10923869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 151
Target Start/End: Complemental strand, 36368630 - 36368583
Alignment:
Q  104 cccaaaaatatgggccaatggaccggcccatgagcccgacccattttt 151  Q
    |||||||||||||||||||||||||||| || | |||| |||||||||    
T  36368630 cccaaaaatatgggccaatggaccggcctataaacccggcccattttt 36368583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 8223204 - 8223250
Alignment:
Q  62 gcccaacttatatatggcctaaataggcttgggccgaaaaagcccaa 108  Q
    ||||||||| | ||||||| |||| ||||||||||||||||||||||    
T  8223204 gcccaacttttgtatggccaaaatgggcttgggccgaaaaagcccaa 8223250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 46
Target Start/End: Original strand, 26003555 - 26003585
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggc 46  Q
    |||||||||||||||||||||||||||||||    
T  26003555 ttttttaacaaaaataaaatgaaatatgggc 26003585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 36368731 - 36368673
Alignment:
Q  49 atgggccggcccggcccaacttatatatggcctaaataggcttgggccgaaaaagccca 107  Q
    ||||||| |||||||||||| | | ||||||| |||| |||||||||||||||| ||||    
T  36368731 atgggccagcccggcccaacctttgtatggcccaaatgggcttgggccgaaaaaaccca 36368673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 29579672 - 29579623
Alignment:
Q  57 gcccggcccaacttatatatggcctaaataggcttgggccgaaaaagccc 106  Q
    |||||||||||||| | | ||||| |||| ||||||||||||||||||||    
T  29579672 gcccggcccaacttttgtctggcccaaatgggcttgggccgaaaaagccc 29579623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 45071989 - 45071945
Alignment:
Q  108 aaaatatgggccaatggaccggcccatgagcccgacccatttttt 152  Q
    ||||||||||| ||||| ||||||||| | |||||||||||||||    
T  45071989 aaaatatgggctaatgggccggcccattatcccgacccatttttt 45071945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 45072131 - 45072091
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccg 56  Q
    |||| |||||||| | |||||||||||||||||||||||||    
T  45072131 ttttataacaaaagtcaaatgaaatatgggctaatgggccg 45072091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 11509285 - 11509195
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggcccggcccaacttatatatggcctaaataggcttgggccgaaaaagccc 106  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||| | ||||||| |||| |||||||||| |||||||||    
T  11509285 ttttttaacaaaaataaaatgaaatatgggctaatggaccagcccggcccaacttttgtatggcccaaatgggcttgggccaaaaaagccc 11509195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 7878542 - 7878627
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggcccggcccaacttatatatggcctaaataggcttgggccgaaaaagccc 106  Q
    |||||||||||||||||||||||||||||| |||||||     |||||||||||| | ||||||| |||| ||||||||||||||||||||    
T  7878542 ttttttaacaaaaataaaatgaaatatgggttaatggg-----ccggcccaacttttgtatggcccaaatgggcttgggccgaaaaagccc 7878627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 28185258 - 28185200
Alignment:
Q  1 taaattagttgataattttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  28185258 taaattagttgata-ttttttaacaaaaataaaatgaaatatgggccaatgggccggccc 28185200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 104 - 151
Target Start/End: Complemental strand, 51549485 - 51549438
Alignment:
Q  104 cccaaaaatatgggccaatggaccggcccatgagcccgacccattttt 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  51549485 cccaaaaatatgggccaatggaccggcccatgagcccgacccattttt 51549438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 28972912 - 28972970
Alignment:
Q  1 taaattagttgataattttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    |||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||    
T  28972912 taaattagttgataatgttttaacaaaa-taaaattaaatatgggctaatgggccggccc 28972970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 34487471 - 34487425
Alignment:
Q  105 ccaaaaatatgggccaatggaccggcccatgagcccgacccattttt 151  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||    
T  34487471 ccaaaaatatgggccaatgggccggcccatgagcccgacccattttt 34487425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 151
Target Start/End: Original strand, 49269340 - 49269385
Alignment:
Q  106 caaaaatatgggccaatggaccggcccatgagcccgacccattttt 151  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  49269340 caaaaatatgggccaatggaccggcccatgaacccgacccattttt 49269385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 13391280 - 13391236
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  13391280 ttttttaacaaaaataaaatgaaatatgggccaatgggccggccc 13391236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 34487616 - 34487572
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  34487616 ttttttaacaaaaataaaatgaaatatgggccaatgggccggccc 34487572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 48080702 - 48080658
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  48080702 ttttttaacaaaaataaaatgaaatatgggccaatgggccggccc 48080658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 49269189 - 49269233
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  49269189 ttttttaacaaaaataaaatgaaatatgggccaatgggccggccc 49269233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 1763819 - 1763862
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggcc 59  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  1763819 ttttttaacaaaaataaaatgaaatatgggccaatgggccggcc 1763862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 1763964 - 1764012
Alignment:
Q  103 gcccaaaaatatgggccaatggaccggcccatgagcccgacccattttt 151  Q
    |||||||||||||||| ||||| |||||||||||||||| |||||||||    
T  1763964 gcccaaaaatatgggctaatgggccggcccatgagcccggcccattttt 1764012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 6377235 - 6377191
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    |||||||| |||||||||||||||||||||| |||||||||||||    
T  6377235 ttttttaaaaaaaataaaatgaaatatgggccaatgggccggccc 6377191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 7069493 - 7069449
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||    
T  7069493 ttttttaacaaaaataaaatgaaatatgggccaatgtgccggccc 7069449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 13391137 - 13391089
Alignment:
Q  103 gcccaaaaatatgggccaatggaccggcccatgagcccgacccattttt 151  Q
    |||||||||||||||||||| | | ||||||||||||||||||||||||    
T  13391137 gcccaaaaatatgggccaataggctggcccatgagcccgacccattttt 13391089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 18732748 - 18732704
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||    
T  18732748 ttttttaacaaaaataaaatgaactatgggcttatgggccggccc 18732704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 51549629 - 51549585
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||    
T  51549629 ttttttaacaaaaataaaatgaaatatgggccaatggaccggccc 51549585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 151
Target Start/End: Complemental strand, 48080583 - 48080536
Alignment:
Q  104 cccaaaaatatgggccaatggaccggcccatgagcccgacccattttt 151  Q
    ||||||||||||||||||||| ||||||||| |||||| |||||||||    
T  48080583 cccaaaaatatgggccaatgggccggcccataagcccggcccattttt 48080536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 106
Target Start/End: Original strand, 1763882 - 1763932
Alignment:
Q  56 ggcccggcccaacttatatatggcctaaataggcttgggccgaaaaagccc 106  Q
    ||||||||||||||| | ||||||| |||| ||||||||||||||||||||    
T  1763882 ggcccggcccaacttttttatggcccaaatgggcttgggccgaaaaagccc 1763932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 6377174 - 6377125
Alignment:
Q  57 gcccggcccaacttatatatggcctaaataggcttgggccgaaaaagccc 106  Q
    |||||||||||||| | ||||||| |||| ||||||||||||||||||||    
T  6377174 gcccggcccaacttttttatggcccaaatgggcttgggccgaaaaagccc 6377125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 55762299 - 55762348
Alignment:
Q  57 gcccggcccaacttatatatggcctaaataggcttgggccgaaaaagccc 106  Q
    |||||||||||||| | ||||||| |||| ||||||||||||||||||||    
T  55762299 gcccggcccaacttttttatggcccaaatgggcttgggccgaaaaagccc 55762348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 55826107 - 55826156
Alignment:
Q  57 gcccggcccaacttatatatggcctaaataggcttgggccgaaaaagccc 106  Q
    |||||||||||||| | ||||||| |||| ||||||||||||||||||||    
T  55826107 gcccggcccaacttttttatggcccaaatgggcttgggccgaaaaagccc 55826156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 7069346 - 7069298
Alignment:
Q  103 gcccaaaaatatgggccaatggaccggcccatgagcccgacccattttt 151  Q
    |||||||||||||||||||| | || ||||||||||||| |||||||||    
T  7069346 gcccaaaaatatgggccaattggccagcccatgagcccggcccattttt 7069298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 7878660 - 7878708
Alignment:
Q  103 gcccaaaaatatgggccaatggaccggcccatgagcccgacccattttt 151  Q
    |||||||||||||||||||||| || |||||| |||||| |||||||||    
T  7878660 gcccaaaaatatgggccaatgggccagcccataagcccggcccattttt 7878708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 13391226 - 13391170
Alignment:
Q  50 tgggccggcccggcccaacttatatatggcctaaataggcttgggccgaaaaagccc 106  Q
    |||||||||||||||||| || | ||||||| |||| |||||||||| |||||||||    
T  13391226 tgggccggcccggcccaatttttgtatggcccaaatgggcttgggccaaaaaagccc 13391170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 31846012 - 31845960
Alignment:
Q  54 ccggcccggcccaacttatatatggcctaaataggcttgggccgaaaaagccc 106  Q
    ||||||||||||||||| | | ||||| |||| ||||||||||||||||||||    
T  31846012 ccggcccggcccaacttttgtctggcccaaatgggcttgggccgaaaaagccc 31845960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 31846074 - 31846031
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    |||||||||||||| |||||||||||||||| |||||||||||||    
T  31846074 ttttttaacaaaaa-aaaatgaaatatgggccaatgggccggccc 31846031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 36505478 - 36505518
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccg 56  Q
    |||||||||||||||||||| |||||| |||||||||||||    
T  36505478 ttttttaacaaaaataaaataaaatataggctaatgggccg 36505518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 41235616 - 41235568
Alignment:
Q  103 gcccaaaaatatgggccaatggaccggcccatgagcccgacccattttt 151  Q
    ||||||||||||| |||||||| |||||||||||||| | |||||||||    
T  41235616 gcccaaaaatatgagccaatgggccggcccatgagccgggcccattttt 41235568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 42384147 - 42384187
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccg 56  Q
    |||||||||||||||||||| |||||||| |||||||||||    
T  42384147 ttttttaacaaaaataaaataaaatatggactaatgggccg 42384187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 49269243 - 49269299
Alignment:
Q  50 tgggccggcccggcccaacttatatatggcctaaataggcttgggccgaaaaagccc 106  Q
    |||||| |||||||||||||| | | ||||| |||| ||||||||||||||||||||    
T  49269243 tgggccagcccggcccaacttttgtctggcccaaatgggcttgggccgaaaaagccc 49269299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 55762235 - 55762278
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    |||||||||||||||||||||||||||||||  ||||||||||||    
T  55762235 ttttttaacaaaaataaaatgaaatatgggc-catgggccggccc 55762278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 55826042 - 55826086
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    |||||||||| |||||||||||||||||||  |||||||||||||    
T  55826042 ttttttaacataaataaaatgaaatatgggtcaatgggccggccc 55826086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 106
Target Start/End: Complemental strand, 7069429 - 7069383
Alignment:
Q  60 cggcccaacttatatatggcctaaataggcttgggccgaaaaagccc 106  Q
    ||||||||||| | ||||||| |||| ||||||||||||||||||||    
T  7069429 cggcccaacttttttatggcccaaatgggcttgggccgaaaaagccc 7069383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 60
Target Start/End: Complemental strand, 41235750 - 41235721
Alignment:
Q  31 aaaatgaaatatgggctaatgggccggccc 60  Q
    ||||||||||||||||||||||||||||||    
T  41235750 aaaatgaaatatgggctaatgggccggccc 41235721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 18732681 - 18732629
Alignment:
Q  54 ccggcccggcccaacttatatatggcctaaataggcttgggccgaaaaagccc 106  Q
    ||||||| |||||| || | ||||||| |||| ||||||||||||||||||||    
T  18732681 ccggcccagcccaatttttgtatggcccaaatgggcttgggccgaaaaagccc 18732629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 28185190 - 28185134
Alignment:
Q  50 tgggccggcccggcccaacttatatatggcctaaataggcttgggccgaaaaagccc 106  Q
    |||||| || || |||||||| | ||||||| |||| ||||||||||||||||||||    
T  28185190 tgggccagctcgacccaacttttttatggcccaaatgggcttgggccgaaaaagccc 28185134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 106
Target Start/End: Complemental strand, 2978724 - 2978633
Alignment:
Q  15 attttttaacaaaaataaaatgaaatatgggctaatgggccggcccggcccaacttatatatggcctaaataggcttgggccgaaaaagccc 106  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||||||| | | || || |||| |||||||||| |||||||||    
T  2978724 attttttaacaaaaataaaatgaaatatgggccaatgggccggcccgacccaacttttgtttgacccaaatgggcttgggccaaaaaagccc 2978633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 6862195 - 6862151
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  6862195 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 6862151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 34677070 - 34677114
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  34677070 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 34677114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 34760498 - 34760403
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatggg-----ccggcccggcccaacttatatatggcctaaataggcttgggccgaaaaagccc 106  Q
    ||||||||||||||| ||||||||||||||||||||||     |||||||| |||||||| | ||||||| |||| || ||||||| |||||||||    
T  34760498 ttttttaacaaaaatcaaatgaaatatgggctaatgggccagcccggcccgacccaacttttgtatggcccaaatggggttgggccaaaaaagccc 34760403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 15707401 - 15707316
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggcccggcccaacttatatatggcctaaataggcttgggccgaaaaagccc 106  Q
    ||||||||||||||||||||||||||||||| ||||||     | |||||||||| | ||||||| |||| |||||||||| |||||||||    
T  15707401 ttttttaacaaaaataaaatgaaatatgggccaatggg-----ctggcccaacttttgtatggcccaaatgggcttgggccaaaaaagccc 15707316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 103 - 152
Target Start/End: Complemental strand, 34760365 - 34760316
Alignment:
Q  103 gcccaaaaatatgggccaatggaccggcccatgagcccgacccatttttt 152  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  34760365 gcccaaaaatatgggtcaatggaccggcccatgagcccgtcccatttttt 34760316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 10321361 - 10321405
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  10321361 ttttttaacaaaaataaaatgaaatatgggctaatggtccggccc 10321405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 15707278 - 15707230
Alignment:
Q  103 gcccaaaaatatgggccaatggaccggcccatgagcccgacccattttt 151  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||    
T  15707278 gcccaaaaatatgggccaatgggccggcccatgagcccggcccattttt 15707230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 11546086 - 11546046
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccg 56  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  11546086 ttttttaacaaaaatcaaatgaaatatgggctaatgggccg 11546046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 6862085 - 6862043
Alignment:
Q  109 aaatatgggccaatggaccggcccatgagcccgacccattttt 151  Q
    |||||||||||||||| ||||||||||||| ||||||||||||    
T  6862085 aaatatgggccaatgggccggcccatgagcacgacccattttt 6862043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 21038808 - 21038854
Alignment:
Q  105 ccaaaaatatgggccaatggaccggcccatgagcccgacccattttt 151  Q
    |||||||||||||||||||| |||||||||||||||| || ||||||    
T  21038808 ccaaaaatatgggccaatgggccggcccatgagcccggcctattttt 21038854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 21038755 - 21038804
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggcccggccc 65  Q
    ||||||||||||||||||||||||||||||  |||||||| |||| ||||    
T  21038755 ttttttaacaaaaataaaatgaaatatggggcaatgggccagcccagccc 21038804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 32011651 - 32011695
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    ||||||||||||||| |||||||||||| ||||||||| ||||||    
T  32011651 ttttttaacaaaaatcaaatgaaatatgtgctaatgggtcggccc 32011695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 166
Target Start/End: Original strand, 10321514 - 10321577
Alignment:
Q  103 gcccaaaaatatgggccaatggaccggcccatgagcccgacccattttttacggctttaatact 166  Q
    |||||||||||| | |||||||  ||||||||||| ||||||||||||| || ||| |||||||    
T  10321514 gcccaaaaatatagaccaatgggtcggcccatgagtccgacccatttttaacagctctaatact 10321577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 30044091 - 30044143
Alignment:
Q  50 tgggccggcccggcccaacttatatatggcctaaataggcttgggccgaaaaa 102  Q
    |||||| ||||| |||||||| | ||||||| |||| ||||||||||||||||    
T  30044091 tgggccagcccgacccaacttttgtatggcccaaatgggcttgggccgaaaaa 30044143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 29170421 - 29170480
Alignment:
Q  1 taaattagttgataattttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  29170421 taaattagttgataattttttaacaaaaataaaatgaaatatgggctaataggccggccc 29170480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 9145255 - 9145342
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggcccggcccaacttatatatggcctaaataggcttgggccgaaaaagcc 105  Q
    ||||||||||||| |||||||||||||||||||||||||| |||| ||||||||| | ||||||| |||| ||| |||||||||||||||    
T  9145255 ttttttaacaaaa-taaaatgaaatatgggctaatgggcctgccc-gcccaacttttgtatggcccaaatgggcctgggccgaaaaagcc 9145342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 25630914 - 25630958
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  25630914 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 25630958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 45317030 - 45317074
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  45317030 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 45317074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 16341485 - 16341543
Alignment:
Q  1 taaattagttgataattttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||    
T  16341485 taaattagttgataatgttttaa-aaaaataaaatgaaatatgggctaataggccggccc 16341543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 33775026 - 33775069
Alignment:
Q  17 tttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  33775026 tttttaacaaaaataaaatgaaatatgggctaatgggccggccc 33775069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 50463152 - 50463249
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccg-------gcccggcccaacttatatatggcctaaataggcttgggccgaaaaagccc 106  Q
    ||||||||||||||||||||||||||||||| |||||||||       |||||||||||||| | | ||||| |||| |||||||||| |||||||||    
T  50463152 ttttttaacaaaaataaaatgaaatatgggccaatgggccggcccaaagcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagccc 50463249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 40503805 - 40503886
Alignment:
Q  17 tttttaacaaaaataaaatgaaatatgggctaatgggccggcccggcccaacttatatatggcctaaataggcttgggccgaaaaag 103  Q
    ||||||||||||||||||||||||||||||||||| |      ||||||||||| | ||||||| |||| |||||||||||||||||    
T  40503805 tttttaacaaaaataaaatgaaatatgggctaatgag-----acggcccaacttttgtatggcccaaatgggcttgggccgaaaaag 40503886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 104 - 153
Target Start/End: Original strand, 26135661 - 26135710
Alignment:
Q  104 cccaaaaatatgggccaatggaccggcccatgagcccgacccatttttta 153  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  26135661 cccaaaaatatgggccaatgggccggcccatgagcccggcccatttttta 26135710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 13159257 - 13159301
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  13159257 ttttttaacaaaaataaaatgaaatatgggccaatgggccggccc 13159301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 18971935 - 18971895
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccg 56  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  18971935 ttttttaacaaaaataaaatgaaatatgggctaatgggccg 18971895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 24426097 - 24426053
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  24426097 ttttttaacaaaaataaaatgaaatatgggcaaatgggccggccc 24426053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 25631087 - 25631135
Alignment:
Q  103 gcccaaaaatatgggccaatggaccggcccatgagcccgacccattttt 151  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||    
T  25631087 gcccaaaaatatgggccaatgggccggcccatgagcccggcccattttt 25631135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 28991118 - 28991058
Alignment:
Q  104 cccaaaaatatgggccaatggaccggcccatgagcccgacccattttttacggctttaata 164  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||| || ||| |||||    
T  28991118 cccaaaaatatgggccaatgggccggcccatgagcccggcccatttttgacagctctaata 28991058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 28991272 - 28991228
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  28991272 ttttttaacaaaaataaaatgaaatatgggccaatgggccggccc 28991228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 29323244 - 29323288
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  29323244 ttttttaacaaaaataaaatgaaatatgggccaatgggccggccc 29323288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 44906186 - 44906230
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  44906186 ttttttaacaaaaataaaatgaagtatgggctaatgggccggccc 44906230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 46558896 - 46558940
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  46558896 ttttttaacaaaagtaaaatgaaatatgggctaatgggccggccc 46558940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 50463287 - 50463335
Alignment:
Q  103 gcccaaaaatatgggccaatggaccggcccatgagcccgacccattttt 151  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||    
T  50463287 gcccaaaaatatgggccaatgggccggcccatgagcccggcccattttt 50463335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 104 - 154
Target Start/End: Complemental strand, 18971786 - 18971736
Alignment:
Q  104 cccaaaaatatgggccaatggaccggcccatgagcccgacccattttttac 154  Q
    |||||||||||||| |||||| |||||||||||||||| ||||||||||||    
T  18971786 cccaaaaatatgggtcaatgggccggcccatgagcccggcccattttttac 18971736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 28986081 - 28986125
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    |||||||||||||||||||| |||||||||| |||||||||||||    
T  28986081 ttttttaacaaaaataaaataaaatatgggccaatgggccggccc 28986125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 53302667 - 53302623
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||    
T  53302667 ttttttaacaaaaatcaaatgaaatatgggccaatgggccggccc 53302623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 53303834 - 53303790
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||    
T  53303834 ttttttaacaaaaatcaaatgaaatatgggccaatgggccggccc 53303790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 55140193 - 55140153
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccg 56  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  55140193 ttttttaacaaaaataaaatgaaatatgggttaatgggccg 55140153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 26135507 - 26135550
Alignment:
Q  17 tttttaacaaaa-ataaaatgaaatatgggctaatgggccggcc 59  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  26135507 tttttaacaaaaaataaaatgaaatatgggctaatgggccggcc 26135550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 55140140 - 55140084
Alignment:
Q  49 atgggccggcccggcccaacttatatatggcctaaataggcttgggccgaaaaagccc 106  Q
    ||||||| |||||||||||||| | ||||||| |||| ||||||||||||||||||||    
T  55140140 atgggccagcccggcccaactt-tgtatggcccaaatgggcttgggccgaaaaagccc 55140084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 28991209 - 28991157
Alignment:
Q  54 ccggcccggcccaacttatatatggcctaaataggcttgggccgaaaaagccc 106  Q
    ||||||||||||||||| | | ||||| |||| ||||||||||||||||||||    
T  28991209 ccggcccggcccaacttttgtctggcccaaatgggcttgggccgaaaaagccc 28991157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 29323307 - 29323359
Alignment:
Q  54 ccggcccggcccaacttatatatggcctaaataggcttgggccgaaaaagccc 106  Q
    ||||||||||||||||| | | ||||| |||| ||||||||||||||||||||    
T  29323307 ccggcccggcccaacttttgtctggcccaaatgggcttgggccgaaaaagccc 29323359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 31373052 - 31373099
Alignment:
Q  103 gcccaaaaatatgggccaatggaccggcccatgagcccgacccattttt 151  Q
    |||||||||||||||| ||||| |||||||||||||| |||||||||||    
T  31373052 gcccaaaaatatgggc-aatgggccggcccatgagcctgacccattttt 31373099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 38733977 - 38734020
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||    
T  38733977 ttttttaacaaaa-taaaatgaaatatggactaatgggccggccc 38734020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 44906333 - 44906381
Alignment:
Q  103 gcccaaaaatatgggccaatggaccggcccatgagcccgacccattttt 151  Q
    ||||||||||||||| |||||| |||||||||||||| | |||||||||    
T  44906333 gcccaaaaatatgggtcaatgggccggcccatgagccgggcccattttt 44906381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 45200126 - 45200170
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    |||||||||||||||||||| |||||| ||| |||||||||||||    
T  45200126 ttttttaacaaaaataaaataaaatataggccaatgggccggccc 45200170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 163
Target Start/End: Original strand, 45317182 - 45317242
Alignment:
Q  103 gcccaaaaatatgggccaatggaccggcccatgagcccgacccattttttacggctttaat 163  Q
    |||||||||||||| ||||||| | |||||||||||| | |||||||||||| ||| ||||    
T  45317182 gcccaaaaatatggaccaatgggctggcccatgagcctggcccattttttacagctctaat 45317242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 44906249 - 44906296
Alignment:
Q  54 ccggcccggcccaacttatatatggcctaaataggcttgggccgaaaa 101  Q
    ||||||||||||||||| | ||||||| |||| |||||||||||||||    
T  44906249 ccggcccggcccaacttttgtatggcccaaatgggcttgggccgaaaa 44906296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 31372967 - 31373017
Alignment:
Q  54 ccggcccggcccaacttatatatggcctaaataggcttgggccgaaaaagc 104  Q
    |||||||| |||||||| | ||||||| |||| ||||||||||||||||||    
T  31372967 ccggcccgacccaacttttttatggcccaaatgggcttgggccgaaaaagc 31373017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 31372903 - 31372948
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggc-taatgggccggccc 60  Q
    |||||||||||||||||||| ||||||||||  |||||||||||||    
T  31372903 ttttttaacaaaaataaaataaaatatgggcaaaatgggccggccc 31372948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 42591136 - 42591087
Alignment:
Q  57 gcccggcccaacttatatatggcctaaataggcttgggccgaaaaagccc 106  Q
    |||||||||||||| | ||||||| |||| |||| |||||||||||||||    
T  42591136 gcccggcccaacttttgtatggcccaaatgggctcgggccgaaaaagccc 42591087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 13159320 - 13159372
Alignment:
Q  54 ccggcccggcccaacttatatatggcctaaataggcttgggccgaaaaagccc 106  Q
    ||||||||||||||||| | | ||||| |||| |||||||||| |||||||||    
T  13159320 ccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagccc 13159372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 151
Target Start/End: Original strand, 13159409 - 13159445
Alignment:
Q  115 gggccaatggaccggcccatgagcccgacccattttt 151  Q
    |||||||||| |||||||||||||||| |||||||||    
T  13159409 gggccaatgggccggcccatgagcccggcccattttt 13159445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 25630993 - 25631049
Alignment:
Q  50 tgggccggcccggcccaacttatatatggcctaaataggcttgggccgaaaaagccc 106  Q
    |||||| |||||||||||||| | || |||| |||| |||||||||| |||||||||    
T  25630993 tgggccagcccggcccaacttttgtaaggcccaaatgggcttgggccaaaaaagccc 25631049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 26135570 - 26135622
Alignment:
Q  54 ccggcccggcccaacttatatatggcctaaataggcttgggccgaaaaagccc 106  Q
    |||||||| |||||||| | || |||| |||| ||||||||||||||||||||    
T  26135570 ccggcccgacccaacttttgtacggcccaaatgggcttgggccgaaaaagccc 26135622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 9651012 - 9651107
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatggg-----ccggcccggcccaacttatatatggcctaaataggcttgggccgaaaaagccc 106  Q
    ||||||||||||||||||||||||||||||| ||||||     ||||||||||||||||| | ||||||| |||| ||||||||||||||||||||    
T  9651012 ttttttaacaaaaataaaatgaaatatgggccaatgggccagcccggcccggcccaacttttttatggcccaaatgggcttgggccgaaaaagccc 9651107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 44088359 - 44088445
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggcccggcccaacttatatatggcctaaataggcttgggccgaaaaa 102  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||  || |||| |||||||||| |||||    
T  44088359 ttttttaacaaaaataaaatgaaatatgagctaatgggccggcccggcccaacttttgtataaccaaaatgggcttgggccaaaaaa 44088445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 26827365 - 26827423
Alignment:
Q  1 taaattagttgataattttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  26827365 taaattagttgataatgttttaa-aaaaataaaatgaaatatgggctaatgggccggccc 26827423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 25325138 - 25325232
Alignment:
Q  17 tttttaacaaaaataaaatgaaatatgggctaatggg-----ccggcccggcccaacttatatatggcctaaataggcttgggccgaaaaagccc 106  Q
    |||||||||||||||||||||||||||||||||||||     |||||||| |||||||| | ||||||| |||| |||||||| | |||||||||    
T  25325138 tttttaacaaaaataaaatgaaatatgggctaatgggccagcccggcccgccccaacttttgtatggcccaaatgggcttgggtcaaaaaagccc 25325232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 12569410 - 12569454
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  12569410 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 12569454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 42808137 - 42808093
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  42808137 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 42808093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 4185376 - 4185335
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccgg 57  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  4185376 ttttttaacaaaaataaaatgaaatatgggctaatgggccgg 4185335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 3587354 - 3587310
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  3587354 ttttttaacaaaaataaaatgaaatatgggctaatgggccagccc 3587310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 4158701 - 4158653
Alignment:
Q  103 gcccaaaaatatgggccaatggaccggcccatgagcccgacccattttt 151  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||    
T  4158701 gcccaaaaatatgggccaatgggccggcccatgagcccggcccattttt 4158653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 103 - 154
Target Start/End: Original strand, 11706628 - 11706679
Alignment:
Q  103 gcccaaaaatatgggccaatggaccggcccatgagcccgacccattttttac 154  Q
    ||||||||| ||||| ||||||| ||||||||||||||||||||||||||||    
T  11706628 gcccaaaaacatgggtcaatggatcggcccatgagcccgacccattttttac 11706679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 38288768 - 38288727
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccgg 57  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  38288768 ttttttaacaaaaatcaaatgaaatatgggctaatgggccgg 38288727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 3237460 - 3237500
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccg 56  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  3237460 ttttttaacaaaaattaaatgaaatatgggctaatgggccg 3237500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 4158821 - 4158777
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||    
T  4158821 ttttttaacaaaaataaaatgaaatatgggccaatgggcgggccc 4158777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 33907216 - 33907261
Alignment:
Q  105 ccaaaaatatgggccaatggaccggcccatgagcccgacccattttt 151  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||    
T  33907216 ccaaaaacatgggccaatgg-ccggcccatgagcccgacccattttt 33907261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 33907096 - 33907140
Alignment:
Q  1 taaattagttgataattttttaacaaaaataaaatgaaatatgggc 46  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||    
T  33907096 taaattagttgataatgttttaa-aaaaataaaatgaaatatgggc 33907140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 154
Target Start/End: Complemental strand, 42807989 - 42807938
Alignment:
Q  103 gcccaaaaatatgggccaatggaccggcccatgagcccgacccattttttac 154  Q
    |||||||||||| ||||||||| ||| |||||||| ||| ||||||||||||    
T  42807989 gcccaaaaatataggccaatgggccgacccatgagtccggcccattttttac 42807938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 46
Target Start/End: Original strand, 40022221 - 40022251
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggc 46  Q
    |||||||||||||||||||||||||||||||    
T  40022221 ttttttaacaaaaataaaatgaaatatgggc 40022251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 26827515 - 26827563
Alignment:
Q  103 gcccaaaaatatgggccaatggaccggcccatgagcccgacccattttt 151  Q
    ||||||||| || ||||||||| ||||||||||||||||  ||||||||    
T  26827515 gcccaaaaacattggccaatgggccggcccatgagcccggtccattttt 26827563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 24409 - 24310
Alignment:
Q  17 tttttaacaaaaataaaatgaaatatgggctaatgggccg-------gcccggcccaacttatatatggcctaaataggcttgggccgaaaaagcccaaa 109  Q
    |||||||||||||||||||||||||||||| |||||||||       ||||||||||| || | ||||||| |||| |||||||||| ||||||||||||    
T  24409 tttttaacaaaaataaaatgaaatatgggccaatgggccggcccaaagcccggcccaaattttgtatggcccaaatgggcttgggccaaaaaagcccaaa 24310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 24285 - 24237
Alignment:
Q  103 gcccaaaaatatgggccaatggaccggcccatgagcccgacccattttt 151  Q
    |||||||||||||||||||||| | || |||||| |||| |||||||||    
T  24285 gcccaaaaatatgggccaatgggctggtccatgaacccggcccattttt 24237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 18405879 - 18405835
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  18405879 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 18405835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 35540330 - 35540276
Alignment:
Q  1 taaattagttgataattttttaacaaaaataaaatgaaatatgggctaatgggccg 56  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  35540330 taaattagttgataatgttttaa-aaaaataaaatgaaatatgggctaatgggccg 35540276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 28210773 - 28210858
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggcccggcccaacttatatatggcctaaataggcttgggccgaaaaagccc 106  Q
    ||||||||||||||||||||||||||||||| ||||||     || ||||||||| | ||||||| |||| |||||||||| |||||||||    
T  28210773 ttttttaacaaaaataaaatgaaatatgggccaatggg-----ccagcccaacttttgtatggcccaaatgggcttgggccaaaaaagccc 28210858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 104 - 151
Target Start/End: Complemental strand, 18405726 - 18405679
Alignment:
Q  104 cccaaaaatatgggccaatggaccggcccatgagcccgacccattttt 151  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||    
T  18405726 cccaaaaatatgggccaatgggtcggcccatgagcccgacccattttt 18405679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 34374802 - 34374744
Alignment:
Q  1 taaattagttgataattttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    |||||||||||||| | |||||| ||||||||||||||||||||||||| ||||||||||    
T  34374802 taaattagttgatattgttttaa-aaaaataaaatgaaatatgggctaacgggccggccc 34374744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 10371255 - 10371299
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    |||||||||||||||||||| |||||||||| |||||||||||||    
T  10371255 ttttttaacaaaaataaaataaaatatgggccaatgggccggccc 10371299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 10371390 - 10371438
Alignment:
Q  103 gcccaaaaatatgggccaatggaccggcccatgagcccgacccattttt 151  Q
    |||||||||||||||||||||| ||| |||||||||||| |||||||||    
T  10371390 gcccaaaaatatgggccaatgggccgccccatgagcccggcccattttt 10371438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 34374653 - 34374605
Alignment:
Q  103 gcccaaaaatatgggccaatggaccggcccatgagcccgacccattttt 151  Q
    ||||||||| |||||||||| |||||| |||||||||||||| ||||||    
T  34374653 gcccaaaaacatgggccaatagaccggtccatgagcccgacctattttt 34374605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 149
Target Start/End: Complemental strand, 18720328 - 18720287
Alignment:
Q  108 aaaatatgggccaatggaccggcccatgagcccgacccattt 149  Q
    ||||||||||| ||||||||| ||||| ||||||||||||||    
T  18720328 aaaatatgggctaatggaccgacccattagcccgacccattt 18720287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 23219803 - 23219843
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccg 56  Q
    ||||||||||||||| |||||||||||| ||||||| ||||    
T  23219803 ttttttaacaaaaatcaaatgaaatatgagctaatgagccg 23219843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 49659 - 49601
Alignment:
Q  1 taaattagttgataattttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    |||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||    
T  49659 taaattagttgataatgttttaa-aaaaataaaattaaatatgggctaatgggccggccc 49601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 3862 - 3811
Alignment:
Q  1 taaattagttgataattttttaacaaaaataaaatgaaatatgggctaatggg 53  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  3862 taaattagttgataatgttttaa-aaaaataaaatgaaatatgggctaatggg 3811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 3729 - 3681
Alignment:
Q  103 gcccaaaaatatgggccaatggaccggcccatgagcccgacccattttt 151  Q
    ||||||||| |||||||||||| |||||| |||||||||||||||||||    
T  3729 gcccaaaaacatgggccaatgggccggcctatgagcccgacccattttt 3681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 147731 - 147687
Alignment:
Q  16 ttttttaacaaaaataaaatgaaatatgggctaatgggccggccc 60  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  147731 ttttttaacaaaaataaaatgaaatatgggccaatgggccggccc 147687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 147579 - 147543
Alignment:
Q  115 gggccaatggaccggcccatgagcccgacccattttt 151  Q
    |||||||||| |||||||||||||||| |||||||||    
T  147579 gggccaatgggccggcccatgagcccggcccattttt 147543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 147668 - 147616
Alignment:
Q  54 ccggcccggcccaacttatatatggcctaaataggcttgggccgaaaaagccc 106  Q
    ||||||||||||||||| | | ||||| |||| |||||||||| |||||||||    
T  147668 ccggcccggcccaacttttgtctggcccaaatgggcttgggccaaaaaagccc 147616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 58287 - 58239
Alignment:
Q  58 cccggcccaacttatatatggcctaaataggcttgggccgaaaaagccc 106  Q
    ||||||||||||| | ||||||| |||| ||||||||||||||||||||    
T  58287 cccggcccaacttttgtatggcccaaatgggcttgggccgaaaaagccc 58239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University