View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2182_high_2 (Length: 414)
Name: NF2182_high_2
Description: NF2182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2182_high_2 |
 | |
|
| [»] scaffold1643 (1 HSPs) |
| | |
|
| [»] scaffold0958 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 24)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 7 - 398
Target Start/End: Original strand, 6915638 - 6916029
Alignment:
| Q |
7 |
gaagcaaagggaaacattcaagacataaccattccttccattcggacatgtgctcaaatcgcaaagtttcaagggatttaaatgaaacatttgatgaatt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6915638 |
gaagcaaagggaaacattcaagacataaccattccttccattcggacatgtgctcaaatcgcaaagtttcaagggatttaaatgaaacatttgatgaatt |
6915737 |
T |
|
| Q |
107 |
gtagccatagagctctgtaccaatgatttctattccatcacagcctgaaataaaaagcttcttgagagaggggaactgcccaagtggcggcaactgggaa |
206 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6915738 |
gtagccatagaactctgtaccaatgatttctattccatcacagcctgaaataaaaagcttcttgagagaggggaactgcccaagtggcggcaactgggaa |
6915837 |
T |
|
| Q |
207 |
cggagtttacatcccaacaattcaagagatactaaatttggtaaatgataatctccaagccaatatggaaagctactgcctccatagtctttgatggtga |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6915838 |
cggagtttacatcccaacaattcaagagatactaaatttggtaaatgataatctccaagccaatatggaaagctactgcctccatagtctttgatggtga |
6915937 |
T |
|
| Q |
307 |
gcctcatgagatttctatttggttgaagagcctccaagatagagatttgtgcttcagttactgacagattcatatctctccattcatcatat |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6915938 |
gcctcatgagatttctatttggttgaagagcctccaagatagagatttgtgcttcagttactgacagattcatatctctccattcatcatat |
6916029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 7 - 398
Target Start/End: Original strand, 7748539 - 7748930
Alignment:
| Q |
7 |
gaagcaaagggaaacattcaagacataaccattccttccattcggacatgtgctcaaatcgcaaagtttcaagggatttaaatgaaacatttgatgaatt |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
7748539 |
gaagcaaagggaaacattcaagacataaccattccttccattctgacatgtgctcaaatcgcaaagtttcaagagatctaaatgaaacatttgatgaatt |
7748638 |
T |
|
| Q |
107 |
gtagccatagagctctgtaccaatgatttctattccatcacagcctgaaataaaaagcttcttgagagaggggaactgcccaagtggcggcaactgggaa |
206 |
Q |
| |
|
|||||| | | ||||| |||||| || ||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||| || ||||||||| |
|
|
| T |
7748639 |
atagccacaaatctctgcaccaataatctctattccatcgcagcctgaaatggaaagcttcttgagagagtggaactgcccaagtgatggtaactgggaa |
7748738 |
T |
|
| Q |
207 |
cggagtttacatcccaacaattcaagagatactaaatttggtaaatgataatctccaagccaatatggaaagctactgcctccatagtctttgatggtga |
306 |
Q |
| |
|
| ||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||| | |
|
|
| T |
7748739 |
caaagtttacatcccaacaattcaagagtaactaaattgggtaaatgataatcgccaagccaatttggaaagctactgcctctgtagtctttgatggtta |
7748838 |
T |
|
| Q |
307 |
gcctcatgagatttctatttggttgaagagcctccaagatagagatttgtgcttcagttactgacagattcatatctctccattcatcatat |
398 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||| |||| ||||| ||||||||||||||||| || ||| |||||||||||||||||| |
|
|
| T |
7748839 |
gcctcatgaggtttctatttggttggagagcctctaagacagagacatgtgcttcagttactgatccatccatttctctccattcatcatat |
7748930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 7 - 370
Target Start/End: Original strand, 6898625 - 6898988
Alignment:
| Q |
7 |
gaagcaaagggaaacattcaagacataaccattccttccattcggacatgtgctcaaatcgcaaagtttcaagggatttaaatgaaacatttgatgaatt |
106 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| | ||||||||||||| |
|
|
| T |
6898625 |
gaagcaaatgaaaacattcaagacataaccattccttccattcagacatgtgctcaaatcgcaaagtttcaagggatctaaatggatcatttgatgaatt |
6898724 |
T |
|
| Q |
107 |
gtagccatagagctctgtaccaatgatttctattccatcacagcctgaaataaaaagcttcttgagagaggggaactgcccaagtggcggcaactgggaa |
206 |
Q |
| |
|
||||||| | | ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
6898725 |
gtagccacaaatctctgtaccaatgatatctattccatcacagcctgaaatggaaagcttcttgagagagggtaactgcccaagtgggggcaactgggaa |
6898824 |
T |
|
| Q |
207 |
cggagtttacatcccaacaattcaagagatactaaatttggtaaatgataatctccaagccaatatggaaagctactgcctccatagtctttgatggtga |
306 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||||||| |||||||||| | | |||||||||| |||||| |||||||||| |||||||||||||| | |
|
|
| T |
6898825 |
cgaagtttacatcccaacaattctagagatactaaattgggtaaatgatgaaccccaagccaatttggaaatctactgcctctgtagtctttgatggtta |
6898924 |
T |
|
| Q |
307 |
gcctcatgagatttctatttggttgaagagcctccaagatagagatttgtgcttcagttactga |
370 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||| |||| ||||| |||||| ||||||||| |
|
|
| T |
6898925 |
gcctcatgaggtttatatttggttgaagagcctctaagacagagacacgtgctttagttactga |
6898988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 9 - 398
Target Start/End: Complemental strand, 6723569 - 6723180
Alignment:
| Q |
9 |
agcaaagggaaacattcaagacataaccattccttccattcggacatgtgctcaaatcgcaaagtttcaagggatttaaatgaaacatttgatgaattgt |
108 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||| |||||| |||| |||| | ||| | |
|
|
| T |
6723569 |
agcaaagggaaaccttcaagacataaccattccttccattcagacatttgctcaaatcgcaaagttacaagggatctaaatggaacacttgaagcattat |
6723470 |
T |
|
| Q |
109 |
agccatagagctctgtaccaatgatttctattccatcacagcctgaaataaaaagcttcttgagagaggggaactgcccaagtggcggcaactgggaacg |
208 |
Q |
| |
|
|||| | | |||||| |||||| | ||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||| || |||||||||| |
|
|
| T |
6723469 |
agccgcaaaactctgttccaatggtctctattccatcacagcctgaaatggaaagcttctcgagaaaggggaactgcccaagtggtggtaactgggaaca |
6723370 |
T |
|
| Q |
209 |
gagtttacatcccaacaattcaagagatactaaatttggtaaatgataatctccaagccaatatggaaagctactgcctccatagtctttgatggtgagc |
308 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| ||||||||| || |||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6723369 |
gaatttacatcccaacaattcaagagatactaaattgggtaaatgacgatacccaacccaatttggaaagctactgcctccatagtctttgatggtgagc |
6723270 |
T |
|
| Q |
309 |
ctcatgagatttctatttggttgaagagcctccaagatagagatttgtgcttcagttactgacagattcatatctctccattcatcatat |
398 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||| ||||| | ||||| ||||||||| |||||| | ||||||| |||||||| |
|
|
| T |
6723269 |
ctcatgaggtttttatttggttgaagagcctccaagacagagacatctgctttagttactgatccattcatttttctccatccatcatat |
6723180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 7 - 393
Target Start/End: Original strand, 6881053 - 6881439
Alignment:
| Q |
7 |
gaagcaaagggaaacattcaagacataaccattccttccattcggacatgtgctcaaatcgcaaagtttcaagggatttaaatgaaacatttgatgaatt |
106 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||| |||||| ||||| ||||||||| |
|
|
| T |
6881053 |
gaagcaaagggaaaccttcaagacataaccattccttccattcagccatgttttcaaatcgcaaagtttcaagggatctaaatggaacatctgatgaatt |
6881152 |
T |
|
| Q |
107 |
gtagccatagagctctgtaccaatgatttctattccatcacagcctgaaataaaaagcttcttgagagaggggaactgcccaagtggcggcaactgggaa |
206 |
Q |
| |
|
||||| | |||||||||||| ||||||||||||||||||| |||||| || ||||||||||||||| ||||||||||| || |||||||||||| |
|
|
| T |
6881153 |
atagccgagaaactctgtaccaataatttctattccatcacagcttgaaatggaacacttcttgagagagggaaactgcccaagcggtggcaactgggaa |
6881252 |
T |
|
| Q |
207 |
cggagtttacatcccaacaattcaagagatactaaatttggtaaatgataatctccaagccaatatggaaagctactgcctccatagtctttgatggtga |
306 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| | ||||||||||| ||||| |||||||||||||| | |
|
|
| T |
6881253 |
tggattttacatcccaacaattcaagagatactaaatttggtaaatgacgatccccaagccagtttggaaagctaccgcctctgtagtctttgatggtta |
6881352 |
T |
|
| Q |
307 |
gcctcatgagatttctatttggttgaagagcctccaagatagagatttgtgcttcagttactgacagattcatatctctccattcat |
393 |
Q |
| |
|
| ||| |||| ||| |||||||||||||||||||||||| |||| |||||||||||||||||| || ||| ||||||||||||| |
|
|
| T |
6881353 |
gactcgtgaggtttatatttggttgaagagcctccaagacagaggcttgtgcttcagttactgatccatccatttctctccattcat |
6881439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 7 - 394
Target Start/End: Original strand, 6140823 - 6141210
Alignment:
| Q |
7 |
gaagcaaagggaaacattcaagacataaccattccttccattcggacatgtgctcaaatcgcaaagtttcaagggatttaaatgaaacatttgatgaatt |
106 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||| ||||| | ||||| |||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
6140823 |
gaagcaaagggaaaccttcaaggcataaccattccttccattcagacatatactcaacccgcaaagtttcaagggatctaaatgcaacatttgatgaatt |
6140922 |
T |
|
| Q |
107 |
gtagccatagagctctgtaccaatgatttctattccatcacagcctgaaataaaaagcttcttgagagaggggaactgcccaagtggcggcaactgggaa |
206 |
Q |
| |
|
|||| | | ||||| ||||||||| |||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
6140923 |
atagctgcaaaactctgaaccaatgatctctattccatgacagcctgaaatggaaagcttcttgagagaagggaactgcccaagtggtggcaactgggaa |
6141022 |
T |
|
| Q |
207 |
cggagtttacatcccaacaattcaagagatactaaatttggtaaatgataatctccaagccaatatggaaagctactgcctccatagtctttgatggtga |
306 |
Q |
| |
|
| | || ||||||||||||||||||||||||||||||| |||| ||||| ||| |||||||||| ||||||||||| |||| ||||| |||||||||| |
|
|
| T |
6141023 |
cagtgtgtacatcccaacaattcaagagatactaaattgggtagatgatgatccccaagccaattaggaaagctactacctctgtagtcattgatggtga |
6141122 |
T |
|
| Q |
307 |
gcctcatgagatttctatttggttgaagagcctccaagatagagatttgtgcttcagttactgacagattcatatctctccattcatc |
394 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |||| ||||||| |||||||| || ||| |||||||||||||| |
|
|
| T |
6141123 |
gcctcatgaggtttctatttggttgaagagcctccaagaccgagacacgtgcttctgttactgagccatccatttctctccattcatc |
6141210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 335
Target Start/End: Complemental strand, 6592845 - 6592517
Alignment:
| Q |
7 |
gaagcaaagggaaacattcaagacataaccattccttccattcggacatgtgctcaaatcgcaaagtttcaagggatttaaatgaaacatttgatgaatt |
106 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||| || |||||| ||||||||||||||| |
|
|
| T |
6592845 |
gaagcaaagggaaaccttcaagacataaccattccttccattcagacatgttctcaaatcgcaatgtttcaaggaatctaaatggaacatttgatgaatt |
6592746 |
T |
|
| Q |
107 |
gtagccatagagctctgtaccaatgatttctattccatcacagcctgaaataaaaagcttcttgagagaggggaactgcccaagtggcggcaactgggaa |
206 |
Q |
| |
|
||||| || | |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| | |||| |
|
|
| T |
6592745 |
atagccgtaaaattctgtaccaatgatctctattccatcacagcctgaaaaggaaagcttcttgagagaggggaactgcccaagtggtggcaattcggaa |
6592646 |
T |
|
| Q |
207 |
cggagtttacatcccaacaattcaagagatactaaatttggtaaatgataatctccaagccaatatggaaagctactgcctccatagtctttgatggtga |
306 |
Q |
| |
|
||| ||||||||||||||||||||| |||||||| || ||||||| | ||| |||||||||| ||||||||| ||||||| |||||||||||||||| |
|
|
| T |
6592645 |
tggaatttacatcccaacaattcaagggatactaacttgggtaaataaagatcgccaagccaatttggaaagcttctgcctctgtagtctttgatggtga |
6592546 |
T |
|
| Q |
307 |
gcctcatgagatttctatttggttgaaga |
335 |
Q |
| |
|
|||||||||| |||||||||||||||||| |
|
|
| T |
6592545 |
gcctcatgaggtttctatttggttgaaga |
6592517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 351
Target Start/End: Complemental strand, 6850770 - 6850428
Alignment:
| Q |
7 |
gaagcaaagggaaacattcaagacataaccattccttccattcggacatgtgctcaaatcgcaaagtttcaagggatttaaatgaaacatttgatgaatt |
106 |
Q |
| |
|
|||| |||||||||| |||||| ||| |||||||||||| || ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6850770 |
gaagtaaagggaaaccttcaagggata-ccattccttccactcagacatgtgcccaaatcgcaaagtttcaagggatttaaatggaacatttgatgaatt |
6850672 |
T |
|
| Q |
107 |
gtagccatagagctctgtaccaatgatttctattccatcacagcctgaaataaaaagcttcttgagagaggggaactgcccaagtggcggcaactgggaa |
206 |
Q |
| |
|
|||||| || | ||||| ||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||| || ||||||||| |
|
|
| T |
6850671 |
gtagccgtaaaactctggaccaatgatctctattccatcacagcctgaaatggaaagattcttgagagaggggaacagcccaagtgatggaaactgggaa |
6850572 |
T |
|
| Q |
207 |
cggagtttacatcccaacaattcaagagatactaaatttggtaaatgataatctccaagccaatatggaaagctactgcctccatagtctttgatggtga |
306 |
Q |
| |
|
|| |||||||||||||||| ||||||||||||||||| |||||||||||||| || ||||||||||| ||||||||||||| |||||||||||||| | |
|
|
| T |
6850571 |
tggtgtttacatcccaacaa-tcaagagatactaaattgggtaaatgataatccccgagccaatatgggaagctactgcctcggtagtctttgatggtta |
6850473 |
T |
|
| Q |
307 |
gcctcatgagatttctatttggttgaagagcctccaagatagaga |
351 |
Q |
| |
|
|||||||||| |||| ||||||||||||||| ||||||| ||||| |
|
|
| T |
6850472 |
gcctcatgaggtttccatttggttgaagagcttccaagacagaga |
6850428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 7 - 397
Target Start/End: Complemental strand, 13272045 - 13271655
Alignment:
| Q |
7 |
gaagcaaagggaaacattcaagacataaccattccttccattcggacatgtgctcaaatcgcaaagtttcaagggatttaaatgaaacatttgatgaatt |
106 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| |||||| ||||||||||| ||| |
|
|
| T |
13272045 |
gaagcaatgggaaaccttcaagacataaccattccttccattcagacatatgctcaacccgcaaagtttcaagggatctaaatggaacatttgatggatt |
13271946 |
T |
|
| Q |
107 |
gtagccatagagctctgtaccaatgatttctattccatcacagcctgaaataaaaagcttcttgagagaggggaactgcccaagtggcggcaactgggaa |
206 |
Q |
| |
|
||||| | | ||||| ||||||||| |||||||||| |||||| ||||| ||||||||| |||||| || |||||||||||||| |||||||||||| |
|
|
| T |
13271945 |
atagccgcaaaactctgaaccaatgatctctattccatgacagccagaaatggaaagcttctcgagagaaggcaactgcccaagtggtggcaactgggaa |
13271846 |
T |
|
| Q |
207 |
cggagtttacatcccaacaattcaagagatactaaatttggtaaatgataatctccaagccaatatggaaagctactgcctccatagtctttgatggtga |
306 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||| |||| ||||| ||| |||||||||| |||||||||||| |||| ||||| |||||||||| |
|
|
| T |
13271845 |
cagagtttacatcccaacaattcaagagatactaaattgggtagatgatgatccccaagccaatttggaaagctactacctctgtagtcattgatggtga |
13271746 |
T |
|
| Q |
307 |
gcctcatgagatttctatttggttgaagagcctccaagatagagatttgtgcttcagttactgacagattcatatctctccattcatcata |
397 |
Q |
| |
|
| |||||||| | |||||||||||||||||| ||||||| |||| |||||||||||||| | || ||| ||||||||||||||||| |
|
|
| T |
13271745 |
gtctcatgaggtgtctatttggttgaagagcttccaagaccgagacacgtgcttcagttactaagccatccatttctctccattcatcata |
13271655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 7 - 397
Target Start/End: Original strand, 6257739 - 6258129
Alignment:
| Q |
7 |
gaagcaaagggaaacattcaagacataaccattccttccattcggacatgtgctcaaatcgcaaagtttcaagggatttaaatgaaacatttgatgaatt |
106 |
Q |
| |
|
|||||| |||||||| |||||| |||||||||||||||||||| ||||| | ||||| |||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
6257739 |
gaagcagagggaaaccttcaaggcataaccattccttccattcagacatatactcaacccgcaaagtttcaagggatctaaatgcaacatttgatgaatt |
6257838 |
T |
|
| Q |
107 |
gtagccatagagctctgtaccaatgatttctattccatcacagcctgaaataaaaagcttcttgagagaggggaactgcccaagtggcggcaactgggaa |
206 |
Q |
| |
|
||||| | | ||||| ||||||||| | |||||||| |||||||||||| |||||||||||||||| ||||||| ||||||||| |||||||||||| |
|
|
| T |
6257839 |
atagccgcaaaactctgaaccaatgatctttattccatgacagcctgaaatggaaagcttcttgagagaagggaacttcccaagtggtggcaactgggaa |
6257938 |
T |
|
| Q |
207 |
cggagtttacatcccaacaattcaagagatactaaatttggtaaatgataatctccaagccaatatggaaagctactgcctccatagtctttgatggtga |
306 |
Q |
| |
|
| |||||||||||| ||||||||||||||||||||||||| || | ||| |||||||||| |||||||||||| |||| ||||| |||||||||| |
|
|
| T |
6257939 |
caatgtttacatcccactaattcaagagatactaaatttggtagattaagatccccaagccaatttggaaagctactacctctgtagtcattgatggtga |
6258038 |
T |
|
| Q |
307 |
gcctcatgagatttctatttggttgaagagcctccaagatagagatttgtgcttcagttactgacagattcatatctctccattcatcata |
397 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||| || | ||||||||||| |||| || ||| ||||||||||||||||| |
|
|
| T |
6258039 |
gcctcatgaggtttctattaggttgaagagcctccaagaccgatacacgtgcttcagtttctgagccatccatttctctccattcatcata |
6258129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 7 - 345
Target Start/End: Original strand, 6167434 - 6167766
Alignment:
| Q |
7 |
gaagcaaagggaaacattcaagacataaccattccttccattcggacatgtgctcaaatcgcaaagtttcaagggatttaaatgaaacatttgatgaatt |
106 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||| ||||| | ||| | |||||||||||||||||| |||||| | ||| |||| |
|
|
| T |
6167434 |
gaagcaaagggaaaccttcaaggcataaccattccttccattcagacatatactccacccgcaaagtttcaagggatctaaatgcagcat------aatt |
6167527 |
T |
|
| Q |
107 |
gtagccatagagctctgtaccaatgatttctattccatcacagcctgaaataaaaagcttcttgagagaggggaactgcccaagtggcggcaactgggaa |
206 |
Q |
| |
|
||||| | | ||||| ||||||| | |||||||||| |||||| ||||| |||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
6167528 |
atagccgaaaaactctgaaccaatgttctctattccatgacagccggaaatggaaagcttcttgagagaatggaactgcccaagtggtggcaactgggaa |
6167627 |
T |
|
| Q |
207 |
cggagtttacatcccaacaattcaagagatactaaatttggtaaatgataatctccaagccaatatggaaagctactgcctccatagtctttgatggtga |
306 |
Q |
| |
|
| | |||||||||| ||||||||||||||||||||||| |||| ||||| ||| |||||||||| |||||||||||| |||| ||||| |||||||||| |
|
|
| T |
6167628 |
cagtgtttacatccaaacaattcaagagatactaaattgggtagatgatgatccccaagccaatttggaaagctactacctctgtagtcattgatggtga |
6167727 |
T |
|
| Q |
307 |
gcctcatgagatttctatttggttgaagagcctccaaga |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6167728 |
gcctcatgagatttctatttggttgaagagcctccaaga |
6167766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 12 - 370
Target Start/End: Original strand, 6236267 - 6236625
Alignment:
| Q |
12 |
aaagggaaacattcaagacataaccattccttccattcggacatgtgctcaaatcgcaaagtttcaagggatttaaatgaaacatttgatgaattgtagc |
111 |
Q |
| |
|
|||||||||| | || ||||||||||| |||||||||| ||||||| || ||| | ||| |||||||||||| |||||| ||||||||||||||| |||| |
|
|
| T |
6236267 |
aaagggaaacctccacgacataaccataccttccattcagacatgttcttaaaacacaatgtttcaagggatctaaatggaacatttgatgaattatagc |
6236366 |
T |
|
| Q |
112 |
catagagctctgtaccaatgatttctattccatcacagcctgaaataaaaagcttcttgagagaggggaactgcccaagtggcggcaactgggaacggag |
211 |
Q |
| |
|
| | | ||||| |||||||| |||||||| ||| ||||| || |||||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
6236367 |
cgcaaaactctgaaccaatgaacgttattccatgacatcctgatatggaaagcttcttgagagaagggaactgcccaagtggtggcaactgggaacaata |
6236466 |
T |
|
| Q |
212 |
tttacatcccaacaattcaagagatactaaatttggtaaatgataatctccaagccaatatggaaagctactgcctccatagtctttgatggtgagcctc |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||| ||| |||||||||| ||||||||||| |||| ||||| |||||| ||||||| |
|
|
| T |
6236467 |
tttacatcccaacaattcaagagatactaaattgggtagatgatgatccccaagccaattaggaaagctactacctctgtagtcattgatgccgagcctc |
6236566 |
T |
|
| Q |
312 |
atgagatttctatttggttgaagagcctccaagatagagatttgtgcttcagttactga |
370 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||| |||||| ||||||||| |
|
|
| T |
6236567 |
atgagatttctatttggtcgaagagcctccaagatcgagacacgtgctttagttactga |
6236625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 12 - 397
Target Start/End: Original strand, 6264224 - 6264612
Alignment:
| Q |
12 |
aaagggaaacattcaagacataaccattccttccattcggacatgtgctcaaatcgcaaagtttcaagggatttaaatgaaacatttgatgaattgtagc |
111 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| ||||||| || || | |||||||||||||||| |||||| |||||||| |||||| |||| |
|
|
| T |
6264224 |
aaagggaaaccatcaagacataaccattccttccattcagacatgttcttgaaacacaaagtttcaagggatctaaatggaacatttgctgaattatagc |
6264323 |
T |
|
| Q |
112 |
catagagctctgtaccaatgatttctattccatcacagcctgaaataaaaagcttcttgagagaggggaactgcccaagtggcggcaactgggaacggag |
211 |
Q |
| |
|
| | ||||| ||||||||| |||| ||||| |||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||| | | |
|
|
| T |
6264324 |
ggcaaaactctgaaccaatgatctctactccatgacagcctgaaatggaaagcttcttgagagaagggaactgcccaagtggtggcaactgggaacagtg |
6264423 |
T |
|
| Q |
212 |
tttacatcccaacaattcaagagatactaaatttggta---aatgataatctccaagccaatatggaaagctactgcctccatagtctttgatggtgagc |
308 |
Q |
| |
|
| |||||||||||||||||||||||| |||||| | || ||||| ||| |||||||||| ||||||||||| |||| ||||| |||||| ||||| |
|
|
| T |
6264424 |
tgtacatcccaacaattcaagagataataaattggctagatgatgatgatccccaagccaattaggaaagctactacctctgtagtcattgatgctgagc |
6264523 |
T |
|
| Q |
309 |
ctcatgagatttctatttggttgaagagcctccaagatagagatttgtgcttcagttactgacagattcatatctctccattcatcata |
397 |
Q |
| |
|
||| ||||||||||||||||| | ||||||||||||| |||| ||||||||||||||| || ||| ||||||||||||||||| |
|
|
| T |
6264524 |
ctcgtgagatttctatttggtcgcagagcctccaagaccgagaaacatgcttcagttactgagccatccatttctctccattcatcata |
6264612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 9 - 226
Target Start/End: Original strand, 6243856 - 6244073
Alignment:
| Q |
9 |
agcaaagggaaacattcaagacataaccattccttccattcggacatgtgctcaaatcgcaaagtttcaagggatttaaatgaaacatttgatgaattgt |
108 |
Q |
| |
|
||||||||||||| ||||| ||||||||| || |||||||| ||||| | |||||| |||||||||||||||||| |||||| || |||||||||||| | |
|
|
| T |
6243856 |
agcaaagggaaaccttcaatacataaccaatctttccattcagacatattctcaaaccgcaaagtttcaagggatctaaatgtaaaatttgatgaattat |
6243955 |
T |
|
| Q |
109 |
agccatagagctctgtaccaatgatttctattccatcacagcctgaaataaaaagcttcttgagagaggggaactgcccaagtggcggcaactgggaacg |
208 |
Q |
| |
|
||| | | ||||| ||||||||| ||||||||| |||||||||||| |||||||||||||||| ||||||||| || | | ||||||| ||||| |
|
|
| T |
6243956 |
agcggcaaaactctgaaccaatgatacctattccatgacagcctgaaatggaaagcttcttgagagatgggaactgcttaatttgtggcaacttggaaca |
6244055 |
T |
|
| Q |
209 |
gagtttacatcccaacaa |
226 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
6244056 |
gagtttacatcccaacaa |
6244073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 249 - 370
Target Start/End: Original strand, 6244072 - 6244193
Alignment:
| Q |
249 |
aaatgataatctccaagccaatatggaaagctactgcctccatagtctttgatggtgagcctcatgagatttctatttggttgaagagcctccaagatag |
348 |
Q |
| |
|
||||||| ||| |||||||||| |||||||||||| |||| ||||| |||||||||||||||| ||| || |||||||||||||||||||||||||||| |
|
|
| T |
6244072 |
aaatgatgatccccaagccaatttggaaagctactacctctgtagtcattgatggtgagcctcacgaggttactatttggttgaagagcctccaagatag |
6244171 |
T |
|
| Q |
349 |
agatttgtgcttcagttactga |
370 |
Q |
| |
|
||| |||||||||||| |||| |
|
|
| T |
6244172 |
agacatgtgcttcagtttctga |
6244193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 29 - 345
Target Start/End: Original strand, 5279218 - 5279534
Alignment:
| Q |
29 |
acataaccattccttccattcggacatgtgctcaaatcgcaaagtttcaagggatttaaatgaaacatttgatgaattgtagccatagagctctgtacca |
128 |
Q |
| |
|
|||||||||||| ||||| || |||||| |||||| |||| |||||||||| |||| |||| |||||||||| |||||||| | |||| ||| |
|
|
| T |
5279218 |
acataaccattcattccaaccgtacatgttatcaaatttcaaattttcaagggaagcgaatggaacagttgatgaattatagccataaaactcttcaccg |
5279317 |
T |
|
| Q |
129 |
atgatttctattccatcacagcctgaaataaaaagcttcttgagagaggggaactgcccaagtggcggcaactgggaacggagtttacatcccaacaatt |
228 |
Q |
| |
|
|| || |||||||||||||| |||||||| |||||| ||| |||||||| | |||||||||||| || |||||| ||| | | ||||| || || |
|
|
| T |
5279318 |
ataatctctattccatcacattctgaaatagaaagctccttaagagagggaagctgcccaagtggtggaaactggaaacaaaatccacatctattcagtt |
5279417 |
T |
|
| Q |
229 |
caagagatactaaatttggtaaatgataatctccaagccaatatggaaagctactgcctccatagtctttgatggtgagcctcatgagatttctatttgg |
328 |
Q |
| |
|
|||| ||||||||||| |||||| | | || |||||||||| |||||||| | |||||| ||||| | |||| |||| || |||| || |||||||| |
|
|
| T |
5279418 |
caagggatactaaattgagtaaataacagtccccaagccaatgtggaaagccagtgcctctgtagtcctcgatgatgagactattgaggttgctatttgg |
5279517 |
T |
|
| Q |
329 |
ttgaagagcctccaaga |
345 |
Q |
| |
|
|| ||| ||||||||| |
|
|
| T |
5279518 |
ttcgagaacctccaaga |
5279534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 4390408 - 4390336
Alignment:
| Q |
8 |
aagcaaagggaaacattcaagacataaccattccttccattcggacatgtgctcaaatcgcaaagtttcaagg |
80 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||| | |||||||| ||||||||||||| |||||||| |
|
|
| T |
4390408 |
aagcaaagggaaaccttcaacacataaccattccttccaattggacatgtcctcaaatcgcaaaatttcaagg |
4390336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 28 - 207
Target Start/End: Original strand, 5262341 - 5262520
Alignment:
| Q |
28 |
gacataaccattccttccattcggacatgtgctcaaatcgcaaagtttcaagggatttaaatgaaacatttgatgaattgtagccatagagctctgtacc |
127 |
Q |
| |
|
||||||||||||| ||||| || |||||| |||||| |||| ||||||| || ||||| |||| |||||||||| |||||||| | |||| ||| |
|
|
| T |
5262341 |
gacataaccattcattccaaccgtacatgttatcaaatttcaaactttcaagagaagcaaatggaacagttgatgaattatagccataaaactcttcacc |
5262440 |
T |
|
| Q |
128 |
aatgatttctattccatcacagcctgaaataaaaagcttcttgagagaggggaactgcccaagtggcggcaactgggaac |
207 |
Q |
| |
|
||||| |||||||||| ||| |||||||| |||||| || |||||||| | || ||||||||| |||||| |||||| |
|
|
| T |
5262441 |
gatgatctctattccataacattctgaaatagaaagctctttaagagagggaagcttcccaagtggtggcaaccgggaac |
5262520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 128 - 345
Target Start/End: Original strand, 5248814 - 5249031
Alignment:
| Q |
128 |
aatgatttctattccatcacagcctgaaataaaaagcttcttgagagaggggaactgcccaagtggcggcaactgggaacggagtttacatcccaacaat |
227 |
Q |
| |
|
|||||| |||||||||| ||| ||||||||| |||||||||||||| |||| ||| | ||| ||| ||||| ||||||| | || |||||| | || |
|
|
| T |
5248814 |
aatgatctctattccatgacaacctgaaatataaagcttcttgagatagggaaacaactcaaatggtggcaaatgggaacaaaattcacatcctaccaga |
5248913 |
T |
|
| Q |
228 |
tcaagagatactaaatttggtaaatgataatctccaagccaatatggaaagctactgcctccatagtctttgatggtgagcctcatgagatttctatttg |
327 |
Q |
| |
|
|| |||||| ||||||| |||||| | | |||||||| | |||||||||| |||||| ||||| ||||||||| ||| | | || || ||||||| |
|
|
| T |
5248914 |
tccagagattctaaattgaacaaatgactacccccaagccagtttggaaagctagtgcctcgatagtgtttgatggtcagcatattaaggttactatttg |
5249013 |
T |
|
| Q |
328 |
gttgaagagcctccaaga |
345 |
Q |
| |
|
||| ||| |||||||||| |
|
|
| T |
5249014 |
gttcaagggcctccaaga |
5249031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 8570331 - 8570257
Alignment:
| Q |
126 |
ccaatgatttctattccatcacagcctgaaataaaaagcttcttgagagaggggaactgcccaagtggcggcaac |
200 |
Q |
| |
|
|||||||||||||| |||| ||| ||||||| |||||| ||||||| |||||| ||||||||||||||||||| |
|
|
| T |
8570331 |
ccaatgatttctataccataacaatatgaaatagaaagctccttgagataggggagctgcccaagtggcggcaac |
8570257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 198
Target Start/End: Original strand, 5297284 - 5297473
Alignment:
| Q |
9 |
agcaaagggaaacattcaagacataaccattccttccattcggacatgtgctcaaatcgcaaagtttcaagggatttaaatgaaacatttgatgaattgt |
108 |
Q |
| |
|
||||||||||||| | || ||||||||| || |||||||| ||||| | ||||||||||||| || | ||||| | || | |||||||||||| |||| |
|
|
| T |
5297284 |
agcaaagggaaacctgtaacacataaccaatctttccattcagacattttctcaaatcgcaaaattgcgagggacctgaacgcaacatttgatgagttgt |
5297383 |
T |
|
| Q |
109 |
agccatagagctctgtaccaatgatttctattccatcacagcctgaaataaaaagcttcttgagagaggggaactgcccaagtggcggca |
198 |
Q |
| |
|
|| || | |||| | |||||| | |||||||||| ||||||||||| |||| | ||||||||| || |||||||||||| |||| |
|
|
| T |
5297384 |
ttccgtaaaactctttgccaatgctctctattccatggcagcctgaaattgaaagttctttgagagagcagagctgcccaagtggtggca |
5297473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 5248715 - 5248771
Alignment:
| Q |
8 |
aagcaaagggaaacattcaagacataaccattccttccattcggacatgtgctcaaa |
64 |
Q |
| |
|
||||||||||||||| |||| ||||||||||| |||||| | |||||||| |||||| |
|
|
| T |
5248715 |
aagcaaagggaaacactcaacacataaccatttcttccaattggacatgttctcaaa |
5248771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 5266617 - 5266655
Alignment:
| Q |
8 |
aagcaaagggaaacattcaagacataaccattccttcca |
46 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
5266617 |
aagcaaagggaaactttcaacacataaccattccttcca |
5266655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 220
Target Start/End: Complemental strand, 4390309 - 4390217
Alignment:
| Q |
128 |
aatgatttctattccatcacagcctgaaataaaaagcttcttgagagaggggaactgcccaagtggcggcaactgggaacggagtttacatcc |
220 |
Q |
| |
|
|||||| ||||||||| ||||| ||||||| |||| || |||||| |||| |||| | ||| ||| ||||||||||||| |||| |||||| |
|
|
| T |
4390309 |
aatgatctctattccaggacagcttgaaatacaaagattattgagatagggaaacttctcaaatggtggcaactgggaacaaagttgacatcc |
4390217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 234 - 343
Target Start/End: Complemental strand, 35141634 - 35141525
Alignment:
| Q |
234 |
gatactaaatttggtaaatgataatctccaagccaatatggaaagctactgcctccatagtctttgatggtgagcctcatgagatttctatttggttgaa |
333 |
Q |
| |
|
||||||||||| |||||||||| ||| |||||||||| |||||||||||| |||| ||||| |||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
35141634 |
gatactaaattgggtaaatgatgatccccaagccaatttggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctatttggctgaa |
35141535 |
T |
|
| Q |
334 |
gagcctccaa |
343 |
Q |
| |
|
||| |||||| |
|
|
| T |
35141534 |
gagactccaa |
35141525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1643 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1643
Description:
Target: scaffold1643; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 207
Target Start/End: Original strand, 825 - 907
Alignment:
| Q |
125 |
accaatgatttctattccatcacagcctgaaataaaaagcttcttgagagaggggaactgcccaagtggcggcaactgggaac |
207 |
Q |
| |
|
||||||||| | |||||||||||| ||||||| |||| ||||||||||| || | |||||||||||| || || ||||||| |
|
|
| T |
825 |
accaatgatctttattccatcacaatatgaaatagaaagattcttgagagaaggaagctgcccaagtggtggaaaatgggaac |
907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0958 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0958
Description:
Target: scaffold0958; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 1168 - 1094
Alignment:
| Q |
126 |
ccaatgatttctattccatcacagcctgaaataaaaagcttcttgagagaggggaactgcccaagtggcggcaac |
200 |
Q |
| |
|
||||||||||||||||||| ||| ||||||| |||||| ||||||| | | || ||| ||||||||||||||| |
|
|
| T |
1168 |
ccaatgatttctattccataacaatatgaaatataaagctccttgagataagagagctggccaagtggcggcaac |
1094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 207
Target Start/End: Complemental strand, 6574691 - 6574621
Alignment:
| Q |
137 |
tattccatcacagcctgaaataaaaagcttcttgagagaggggaactgcccaagtggcggcaactgggaac |
207 |
Q |
| |
|
|||||||| ||| |||||||| ||||||| ||||||| | |||| ||| ||||||||||| ||| |||||| |
|
|
| T |
6574691 |
tattccattacaacctgaaatgaaaagctccttgagacatgggagctgtccaagtggcggaaacagggaac |
6574621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University