View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2182_low_10 (Length: 249)
Name: NF2182_low_10
Description: NF2182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2182_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 27295062 - 27294824
Alignment:
| Q |
1 |
catccaccacattagatagatgttcaatactcggtatagatgcgctgcacagattcaataggcataagccaaatatgaagaacttcaagcttctctatgt |
100 |
Q |
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| T |
27295062 |
catccaccacattagatagatgttcaatactcggtatagatgcgctgcacagattcaataggcataagccaaatatgaagaacttcaagcttctctatgt |
27294963 |
T |
|
| Q |
101 |
gttggatgccagtcggtatattctcaaatcggggaattgagcctaactgaagctttttcagataatgcaatgctcctttgtcgataataatatatctcaa |
200 |
Q |
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|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
27294962 |
gttggatgccagtcggtacattctcaagtcggggaattgagcctaactgaagctttttcagataaggcaatgctccttcgtcgataataatatatctcaa |
27294863 |
T |
|
| Q |
201 |
ttccatcgagaatccaacgtacagctcctttagtctctg |
239 |
Q |
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| T |
27294862 |
ttccatcgagaatccaacgtacagctcctttagtctctg |
27294824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 22036603 - 22036562
Alignment:
| Q |
83 |
cttcaagcttctctatgtgttggatgccagtcggtatattct |
124 |
Q |
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| T |
22036603 |
cttcaagcttctccaagtgttggatgccagtgggtatattct |
22036562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 22117171 - 22117130
Alignment:
| Q |
83 |
cttcaagcttctctatgtgttggatgccagtcggtatattct |
124 |
Q |
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| T |
22117171 |
cttcaagcttctccaagtgttggatgccagtgggtatattct |
22117130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 124
Target Start/End: Complemental strand, 21947712 - 21947672
Alignment:
| Q |
84 |
ttcaagcttctctatgtgttggatgccagtcggtatattct |
124 |
Q |
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| T |
21947712 |
ttcaagcttctccaagtgttggatgccagtgggtatattct |
21947672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 124
Target Start/End: Complemental strand, 22106796 - 22106756
Alignment:
| Q |
84 |
ttcaagcttctctatgtgttggatgccagtcggtatattct |
124 |
Q |
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|||||||||||| | ||||||||||||||| |||||||||| |
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| T |
22106796 |
ttcaagcttctccaagtgttggatgccagtgggtatattct |
22106756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 22613608 - 22613672
Alignment:
| Q |
46 |
tgcacagattcaataggcataagccaaatatgaagaacttcaagcttctctatgtgttggatgcc |
110 |
Q |
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|||||| ||||| | |||||| |||||||| ||||||| ||||||||||| |||||||||||| |
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| T |
22613608 |
tgcacaaattcagttggcatatcccaaatattgagaactttaagcttctctaagtgttggatgcc |
22613672 |
T |
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