View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2182_low_13 (Length: 238)
Name: NF2182_low_13
Description: NF2182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2182_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 28238852 - 28238633
Alignment:
| Q |
1 |
cacaaaaaccatataaaagaaaatacaaagtaccagcagtaggatgatgaccggtgtcgatgatcttatggaaaagagagatagctgaagacatgttacc |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28238852 |
cacaaaaaccatataaaagagaatacaaagtaccagcagtaggatgatgaccggtgtcgatgatcttatggaaaagagagatagctgaagacatgttacc |
28238753 |
T |
|
| Q |
101 |
atcgacagaatgacatttgatgaggatagcccaagtgtgaatgtcttgggtagactcatccaatttattaaaaagggaaaaaacagtggggtaagaccca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28238752 |
atcgacagaatgacatttgatgaggatagcccaagtgtgaatgtcttgggtagactcatccaatttattaaaaagggaaaaaacagtggggtaagaccca |
28238653 |
T |
|
| Q |
201 |
actttaacaagggattctaa |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
28238652 |
actttaacaagggattctaa |
28238633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 146
Target Start/End: Complemental strand, 47568890 - 47568782
Alignment:
| Q |
38 |
agtaggatgatgaccggtgtcgatgatcttatggaaaagagagatagctgaagacatgttaccatcgacagaatgacatttgatgaggatagcccaagtg |
137 |
Q |
| |
|
|||||||| || ||||||||||||||| |||||||| | ||||||| |||||||||| ||||| | ||| ||||| | |||||||||||||||||| |
|
|
| T |
47568890 |
agtaggattatcaccggtgtcgatgattttatggaataaagagatatctgaagacattttaccttgtctagagtgacactggatgaggatagcccaagta |
47568791 |
T |
|
| Q |
138 |
tgaatgtct |
146 |
Q |
| |
|
||| ||||| |
|
|
| T |
47568790 |
tgactgtct |
47568782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 23786781 - 23786715
Alignment:
| Q |
34 |
cagcagtaggatgatgaccggtgtcgatgatcttatggaaaagagagatagctgaagacatgttacc |
100 |
Q |
| |
|
|||||||||||| |||||||| ||||||||| |||| ||| | | ||| |||||||||||||||||| |
|
|
| T |
23786781 |
cagcagtaggataatgaccggagtcgatgattttattgaataaatagagagctgaagacatgttacc |
23786715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 28231233 - 28231180
Alignment:
| Q |
38 |
agtaggatgatgaccggtgtcgatgatcttatggaaaagagagatagctgaaga |
91 |
Q |
| |
|
||||||||||| ||||||||||||||| |||| ||| ||||||| ||||||||| |
|
|
| T |
28231233 |
agtaggatgataaccggtgtcgatgattttattgaatagagagaaagctgaaga |
28231180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 28326035 - 28325923
Alignment:
| Q |
34 |
cagcagtaggatgatgaccggtgtcgatgatcttatggaaaagagagatagctgaagacatgttaccatcgacagaatgacatttgatgaggatagccca |
133 |
Q |
| |
|
||||||||||| | |||||| ||| ||||| |||||||| | ||| || || ||| ||||||||||||||| || ||| |||||||||||| | ||| |
|
|
| T |
28326035 |
cagcagtaggacggtgaccgttgtttatgattttatggaagaaagacatggcggaaaacatgttaccatcgaaagcgtgagctttgatgaggattgtcca |
28325936 |
T |
|
| Q |
134 |
agtgtgaatgtct |
146 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
28325935 |
agtatgaatgtct |
28325923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 6327145 - 6327212
Alignment:
| Q |
79 |
agatagctgaagacatgttaccatcgacagaatgacatttgatgaggatagcccaagtgtgaatgtct |
146 |
Q |
| |
|
||||||| |||||||||||||||| || | | |||||| |||||||||| | |||||| ||||||||| |
|
|
| T |
6327145 |
agatagccgaagacatgttaccatggaaacagtgacatgtgatgaggattgaccaagtatgaatgtct |
6327212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 21159467 - 21159565
Alignment:
| Q |
2 |
acaaaaaccatataaaagaaaatacaaagtaccagcagtaggatgatgaccggtgtcgatgatcttatggaaaagagagatagctgaagacatgttacc |
100 |
Q |
| |
|
||||||||||| | ||||| || |||||| ||| | ||||||||| |||||||| |||||| ||| ||| |||||||| || |||||||||||||| |
|
|
| T |
21159467 |
acaaaaaccatcgagaagaagattcaaagtttcagtactaggatgattaccggtgttgatgatattacagaatagagagatggcagaagacatgttacc |
21159565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University