View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2182_low_3 (Length: 412)
Name: NF2182_low_3
Description: NF2182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2182_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 11 - 396
Target Start/End: Original strand, 8351937 - 8352324
Alignment:
| Q |
11 |
caaaggcagttttcatatttgaaacaaaacttctatgatattcgtacaaaataaaatcagcttatgtagccaaagtaaattattacaacgattatttcaa |
110 |
Q |
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| T |
8351937 |
caaaggcagttttcatatttgaaacaaaacttctatgatattcgtacaaaataaa----gcttatgtagccaaagtaaattattacaacgattatttcaa |
8352032 |
T |
|
| Q |
111 |
taagcataagtttggatcatatataggtgctataaacatgaacataataaaacttaccaaagaacaaccaaagagacccttttgttggtaatcacagctt |
210 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||| |
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| T |
8352033 |
taagcataagtttgaatcatatataggtgctataaacatgaacataataaaacttaccaaagaacaaccaaagaggcccttttgttagtaatcactgctt |
8352132 |
T |
|
| Q |
211 |
aatgctcaatgaaaattttatagaaacggttcaatagaacaaaccaggtatgagataaccactgcttaattaggctgagtttaaccaaatccacgaagct |
310 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| || |||||| |
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| T |
8352133 |
aatgctcaatgaaaatttcatagaaacggttcaatagaacaaaccaggtatgagataaccactgcttaactaggctcagtttaaccaaattcaagaagct |
8352232 |
T |
|
| Q |
311 |
atgagt------acaccaaatctctctaatattagtcattttgatcctcgaatattgttttgatcctcgggtatatatttttagtttgtata |
396 |
Q |
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| T |
8352233 |
atgagtacaagcacaccaaatctctttaaaatttgtcattttgatcctcgaatattgttttggacctcgggtatatatttttagtttgtata |
8352324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 78 - 322
Target Start/End: Original strand, 8365442 - 8365699
Alignment:
| Q |
78 |
agccaaagtaaattattacaacgattatttcaataagcataagtttggatcatatataggtgctataaacatgaacataataaaacttaccaaagaacaa |
177 |
Q |
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|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
8365442 |
agccaaagtaaattataacaacaattatttcaataagcataagtttggatcatatataggtgctataaacatcaacataataaaacttaccaaagaacaa |
8365541 |
T |
|
| Q |
178 |
ccaaagagacccttttgttggtaatcacagcttaatg--------------ctcaatgaaaattttatagaaacggttcaatagaacaaaccaggtatga |
263 |
Q |
| |
|
||||||| |||||||||||||| ||||| ||||| ||| || ||||| | |||||||| |||||| |||||||||||||||||| |
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| T |
8365542 |
tcaaagaggcccttttgttggtatccacag-gtaatgcatcaaacaggtacctcgattaaaatctcatagaaacagttcaacagaacaaaccaggtatga |
8365640 |
T |
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| Q |
264 |
gataaccactgcttaattaggctgagtttaaccaaatccacgaagctatgagtacacca |
322 |
Q |
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| T |
8365641 |
ggtaaccgctgcttaactaggctgagtttaaccaattccaagaagctacgagtacacca |
8365699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 81 - 212
Target Start/End: Original strand, 8357098 - 8357230
Alignment:
| Q |
81 |
caaagtaaattattacaacgattatttcaataagcataagtttggatcatatataggtgctataaacatgaacataataaaacttaccaa-agaacaacc |
179 |
Q |
| |
|
||||||||||||| |||||||| |||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||| ||||||| | |
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| T |
8357098 |
caaagtaaattataacaacgataatttaaataagcataagttcagatcatacataggtgctataaacatgaacataataaaactttgcaacagaacaatc |
8357197 |
T |
|
| Q |
180 |
aaagagacccttttgttggtaatcacagcttaa |
212 |
Q |
| |
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|||||| ||||||||||||||| ||| |||||| |
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| T |
8357198 |
aaagaggcccttttgttggtaaccactgcttaa |
8357230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 266 - 322
Target Start/End: Original strand, 8357217 - 8357273
Alignment:
| Q |
266 |
taaccactgcttaattaggctgagtttaaccaaatccacgaagctatgagtacacca |
322 |
Q |
| |
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|||||||||||||| |||||| |||||||||||||||| |||||||||||||||||| |
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| T |
8357217 |
taaccactgcttaactaggctaagtttaaccaaatccaagaagctatgagtacacca |
8357273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 8480456 - 8480391
Alignment:
| Q |
11 |
caaaggcagttttcatatttgaaacaaaacttctatgatattcgt-acaaaataaaatcagcttat |
75 |
Q |
| |
|
|||||| ||||||||| |||||||||||| |||||| |||||| | ||||||||||| |||||||| |
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| T |
8480456 |
caaaggtagttttcatctttgaaacaaaatttctataatattcataacaaaataaaagcagcttat |
8480391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 359
Target Start/End: Original strand, 8365828 - 8365866
Alignment:
| Q |
321 |
caaatctctctaatattagtcattttgatcctcgaatat |
359 |
Q |
| |
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||||| ||||||||||||||||||||| ||||||||||| |
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| T |
8365828 |
caaatttctctaatattagtcattttggtcctcgaatat |
8365866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 8345810 - 8345882
Alignment:
| Q |
12 |
aaaggcagttttcatatttgaaacaaaacttctatgatattcgta-caaaataaaatcagcttatgtagccaa |
83 |
Q |
| |
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||||| ||||||||| |||| ||||||| |||||| ||||| || |||||||||| |||||||| ||||||| |
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| T |
8345810 |
aaaggtagttttcatctttgtaacaaaatttctatattattcttaacaaaataaaagcagcttatatagccaa |
8345882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 353
Target Start/End: Original strand, 8357402 - 8357434
Alignment:
| Q |
321 |
caaatctctctaatattagtcattttgatcctc |
353 |
Q |
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||||||||||||||||||||||||||| ||||| |
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| T |
8357402 |
caaatctctctaatattagtcattttggtcctc |
8357434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 79 - 179
Target Start/End: Complemental strand, 7287122 - 7287022
Alignment:
| Q |
79 |
gccaaagtaaattattacaacgattatttcaataagcataagtttggatcatatataggtgctataaacatgaacataataaaacttaccaaagaacaac |
178 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||| | | ||||||| |||||||||| |
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| T |
7287122 |
gccaatgtaaattattacaacgattatttcaataagcataagttcagatcatatataggtgttataaacatcaacaacagagaacttacaaaagaacaac |
7287023 |
T |
|
| Q |
179 |
c |
179 |
Q |
| |
|
| |
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|
| T |
7287022 |
c |
7287022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 170
Target Start/End: Original strand, 974442 - 974512
Alignment:
| Q |
100 |
gattatttcaataagcataagtttggatcatatataggtgctataaacatgaacataataaaacttaccaa |
170 |
Q |
| |
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||||| |||||||||||| |||| ||||||||||| ||||||||||||| ||| ||| |||||||||| |
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| T |
974442 |
gattacttcaataagcattagttcggatcatatattcgtgctataaacatcaacggcatagaacttaccaa |
974512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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